Co-expression analysis

Gene ID	TaAffx.31054.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g18930: cyclic phosphodiesterase (HF=1e-2)
Module size	6 genes
NF	0.21
%ile	36.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.82	TaAffx.31054.1.S1_at	CA619964	-	-	1e-2	At4g18930	cyclic phosphodiesterase	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.93	TaAffx.54733.1.S1_at	CA677702	-	-	4e+0	At5g20010	RAN-1	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.70716.1.S1_at	BQ801496	-	-	1e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	Ta.9542.3.S1_x_at	CA640676	-	-	4e-3	At5g01810	CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.95	TaAffx.79549.1.S1_s_at	CA713253	Protein serine/threonine kinase-like	-	1e+1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.95	TaAffx.26470.1.S1_at	CA688638	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.8	99.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
19.7	99.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.5	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.6	97.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.1	96.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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