Co-expression analysis

Gene ID TaAffx.31053.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g24920: protein transport protein SEC61 gamma subunit, putative (HF=2e-4)
Module size 6 genes
NF 0.19
%ile 33.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.79TaAffx.31053.1.S1_atCA619965--2e-4At4g24920protein transport protein SEC61 gamma subunit, putativeO.I.H.G.S.X.
0.4058.40.94TaAffx.79294.1.S1_atBF482364--5e-1At4g12820F-box family proteinO.I.H.G.S.X.
0.3346.90.96TaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.1821.00.95TaAffx.105451.1.S1_atCA734135--1e+0At3g06730thioredoxin family proteinO.I.H.G.S.X.
0.1314.60.94TaAffx.110270.1.S1_atCA661857--4e+0At4g02360unknown proteinO.I.H.G.S.X.
0.056.70.95TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.699.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.898.9GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.597.8GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.595.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM138172genotype DH95 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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