Co-expression analysis

Gene ID	TaAffx.30673.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g25630: FIB2 (FIBRILLARIN 2) (HF=7e-11)
Module size	6 genes
NF	0.78
%ile	96.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	0.96	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	TaAffx.58533.1.S1_at	CA618813	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.95	TaAffx.31791.1.S1_at	CA607567	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	Ta.1965.1.S1_at	CA634037	-	-	6e-3	At4g23330	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	TaAffx.8469.1.S1_at	CA624919	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.96	TaAffx.84292.1.S1_at	CA640524	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.8	97.2	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.8	97.2	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
4.8	97.2	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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