Co-expression analysis

Gene ID	TaAffx.30652.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=3e-4)
Module size	25 genes
NF	0.31
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.8	0.93	TaAffx.30652.1.S1_at	CA623146	-	-	3e-4	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.94	Ta.18034.1.S1_at	CA627515	-	-	1e-2	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	Ta.20799.1.S1_at	CA487003	-	-	3e-1	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.112158.1.S1_x_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	Ta.26670.1.A1_at	CD491523	-	-	9e-20	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.29037.1.S1_at	CA651806	-	-	1e+1	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	TaAffx.93677.1.S1_at	BG906767	-	-	3e+0	At5g19473	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.119035.1.A1_at	BJ295436	-	-	1e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.51397.1.S1_at	CA725473	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	TaAffx.31313.1.S1_at	CA617546	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.93	TaAffx.111583.1.S1_x_at	CA637262	-	-	1e+1	At5g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	Ta.12789.2.A1_x_at	CK211356	-	-	5e-9	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	Ta.17601.1.S1_at	CA622316	-	-	4e+0	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.25400.1.A1_at	CD490744	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	Ta.28609.1.S1_x_at	CK217364	-	-	8e-15	At2g19750	40S ribosomal protein S30 (RPS30A)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.95	TaAffx.32297.1.S1_at	CA597365	-	-	7e-2	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	Ta.8457.1.A1_x_at	BE430699	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.1	94.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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