Co-expression analysis

Gene ID	TaAffx.30393.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12)
Module size	6 genes
NF	0.46
%ile	72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	TaAffx.30393.1.S1_at	CA624950	-	-	2e-12	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.55881.1.S1_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.55881.1.S1_x_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.9308.2.S1_x_at	BE411983	-	-	2e+0	At3g61070	PEX11E	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.23163.1.A1_at	CK216129	-	-	3e-1	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.28197.1.S1_at	BQ620267	-	-	2e-60	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9	98.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1616677_at, orthologous to the query gene, TaAffx.30393.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	1616677_at	At2g47910	-	-	4e-10	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1606619_at	At2g47910	hypothetical protein LOC100263079	-	4e-4	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	1612910_at	At2g47910	-	-	1e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1612527_at	At2g47910	-	-	1e+0	At1g69600	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1610749_at	At2g47910	hypothetical protein LOC100250629	-	1e-4	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1622857_at	At2g47910	-	-	5e-2	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.	Please select
0.18	19.4	1608414_x_at	At2g47910	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1613848_at	At2g47910	-	-	4e-9	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	1620364_at	At2g47910	-	-	1e+0	At2g18690	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1612421_at	At2g47910	hypothetical protein LOC100262002	-	4e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.15	15.6	1615305_at	At2g47910	-	-	3e-1	At2g34140	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1617335_at	At2g47910	-	-	4e-1	At2g18410	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1620333_at	At2g47910	-	-	1e-10	At3g08020	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.12	12.1	1620984_at	At2g47910	-	-	4e+0	At1g44094	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1620067_at	At2g47910	-	-	1e+1	At5g64530	XND1	O.I.	H.G.	S.X.	Please select
0.09	9.4	1618020_x_at	At2g47910	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.08	8.5	1618124_at	At2g47910	-	-	2e-14	At3g19490	ATNHD1	O.I.	H.G.	S.X.	Please select
0.06	6.8	1612555_s_at	At2g47910	hypothetical protein LOC100246037	-	8e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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