CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.30393.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12)

Module size 6 genes

NF 0.46

%ile 72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.98 TaAffx.30393.1.S1_at CA624950 - - 2e-12 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.60 81.0 0.97 TaAffx.55881.1.S1_at CA744754 - - 2e-2 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.60 81.0 0.97 TaAffx.55881.1.S1_x_at CA744754 - - 2e-2 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.31 42.7 0.98 Ta.9308.2.S1_x_at BE411983 - - 2e+0 At3g61070 PEX11E O.I. H.G. S.X.
0.31 42.7 0.98 Ta.23163.1.A1_at CK216129 - - 3e-1 At1g06770 DRIP1 (DREB2A-INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.22 27.1 0.98 Ta.28197.1.S1_at BQ620267 - - 2e-60 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.0 99.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6 98.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9 98.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8 98.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7 98.7 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5 98.6 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.140205.1.A1_at, orthologous to the query gene, TaAffx.30393.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 88.1 PtpAffx.140205.1.A1_at At2g47910 - - 5e-7 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.44 71.9 PtpAffx.715.1.A1_s_at At2g47910 hypothetical protein - 9e-5 At3g19170 ATPREP1 (PRESEQUENCE PROTEASE 1) O.I. H.G. S.X.
0.40 67.0 PtpAffx.129.1.A1_at At2g47910 hypothetical protein - 3e-4 At5g04490 VTE5 (vitamin E pathway gene5) O.I. H.G. S.X.
0.33 57.5 PtpAffx.83582.1.S1_at At2g47910 hypothetical protein - 1e-1 At5g67310 CYP81G1 O.I. H.G. S.X.
0.33 57.5 Ptp.3865.2.S1_a_at At2g47910 hypothetical protein - 2e-6 At1g71480 nuclear transport factor 2 (NTF2) family protein O.I. H.G. S.X.
0.05 8.3 PtpAffx.200985.1.S1_at At2g47910 hypothetical protein - 1e-7 At3g01660 methyltransferase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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