CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.30393.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12)

Module size 6 genes

NF 0.46

%ile 72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.98 TaAffx.30393.1.S1_at CA624950 - - 2e-12 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.60 81.0 0.97 TaAffx.55881.1.S1_at CA744754 - - 2e-2 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.60 81.0 0.97 TaAffx.55881.1.S1_x_at CA744754 - - 2e-2 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.31 42.7 0.98 Ta.9308.2.S1_x_at BE411983 - - 2e+0 At3g61070 PEX11E O.I. H.G. S.X.
0.31 42.7 0.98 Ta.23163.1.A1_at CK216129 - - 3e-1 At1g06770 DRIP1 (DREB2A-INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.22 27.1 0.98 Ta.28197.1.S1_at BQ620267 - - 2e-60 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.0 99.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6 98.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9 98.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8 98.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7 98.7 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5 98.6 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os08g0167500, orthologous to the query gene, TaAffx.30393.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 83.8 Os08g0167500 At2g47910 - - 1e-5 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.80 94.6 Os02g0794400 At2g47910 - Initiation factor 3 family protein 2e-1 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.77 93.1 Os05g0388500 At2g47910 - 50S ribosomal protein L1 2e-26 At3g63490 ribosomal protein L1 family protein O.I. H.G. S.X.
0.63 82.7 Os03g0331600 At2g47910 - Conserved hypothetical protein 2e-12 At5g58250 unknown protein O.I. H.G. S.X.
0.63 82.7 Os02g0538000 At2g47910 - Threonyl-tRNA synthetase, class IIa family protein 9e-20 At2g04842 EMB2761 (EMBRYO DEFECTIVE 2761) O.I. H.G. S.X.
0.62 81.5 Os01g0973400 At2g47910 - Conserved hypothetical protein 48 family protein 5e-20 At2g39670 radical SAM domain-containing protein O.I. H.G. S.X.
0.62 81.5 Os05g0571400 At2g47910 - Conserved hypothetical protein 4e-4 At1g64355 unknown protein O.I. H.G. S.X.
0.59 78.0 Os04g0105700 At2g47910 - Conserved hypothetical protein 2e+0 At5g44568 unknown protein O.I. H.G. S.X.
0.55 73.7 Os05g0401200 At2g47910 - Hypothetical protein 7e-2 At3g31350 unknown protein O.I. H.G. S.X.
0.53 71.3 Os06g0146300 At2g47910 - Conserved hypothetical protein 6e-2 At5g27560 unknown protein O.I. H.G. S.X.
0.50 68.0 Os01g0102600 At2g47910 - Shikimate kinase domain containing protein 6e-4 At1g35460 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.49 64.4 Os02g0725200 At2g47910 - Nuclear protein SET domain containing protein 3e-25 At3g07670 SET domain-containing protein O.I. H.G. S.X.
0.47 62.3 Os01g0798500 At2g47910 - Malate synthase-like family protein 2e-3 At5g44650 unknown protein O.I. H.G. S.X.
0.46 60.9 Os08g0562100 At2g47910 - Sorghum chloroplast CM3 malate dehydrogenase(NADP) (Fragment) 7e-20 At5g58330 malate dehydrogenase (NADP), chloroplast, putative O.I. H.G. S.X.
0.46 60.9 Os01g0924000 At2g47910 - Chloroplast 50S ribosomal protein L27 (Fragment) 6e-2 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) O.I. H.G. S.X.
0.44 58.1 Os03g0685000 At2g47910 - Ferredoxin 5e-10 At1g32550 ferredoxin family protein O.I. H.G. S.X.
0.40 51.1 Os01g0151200 At2g47910 - Inner membrane protein ALBINO3, chloroplastprecursor. Splice isoform 2 1e-37 At2g28800 ALB3 (ALBINO 3) O.I. H.G. S.X.
0.23 21.2 Os01g0633000 At2g47910 - Ribosomal protein L31 family protein 4e-1 At4g03590 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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