Co-expression analysis

Gene ID	TaAffx.30393.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12)
Module size	6 genes
NF	0.46
%ile	72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	TaAffx.30393.1.S1_at	CA624950	-	-	2e-12	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.55881.1.S1_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.55881.1.S1_x_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.9308.2.S1_x_at	BE411983	-	-	2e+0	At3g61070	PEX11E	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.23163.1.A1_at	CK216129	-	-	3e-1	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.28197.1.S1_at	BQ620267	-	-	2e-60	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9	98.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, Gma.431.2.S1_a_at, orthologous to the query gene, TaAffx.30393.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.431.2.S1_a_at	At2g47910	proliferating cell nuclear antigen	-	1e-46	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.91	98.6	Gma.431.2.S1_x_at	At2g47910	proliferating cell nuclear antigen	-	1e-46	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.80	91.5	GmaAffx.37281.1.S1_at	At2g47910	-	-	2e-66	At2g16440	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.15947.1.S1_at	At2g47910	-	-	8e-1	At5g56260	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.431.2.S1_at	At2g47910	proliferating cell nuclear antigen	-	1e-46	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.46567.1.S1_at	At2g47910	-	-	2e-17	At5g41880	POLA3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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