CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.30393.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12)

Module size 6 genes

NF 0.46

%ile 72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.98 TaAffx.30393.1.S1_at CA624950 - - 2e-12 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.60 81.0 0.97 TaAffx.55881.1.S1_at CA744754 - - 2e-2 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.60 81.0 0.97 TaAffx.55881.1.S1_x_at CA744754 - - 2e-2 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.31 42.7 0.98 Ta.9308.2.S1_x_at BE411983 - - 2e+0 At3g61070 PEX11E O.I. H.G. S.X.
0.31 42.7 0.98 Ta.23163.1.A1_at CK216129 - - 3e-1 At1g06770 DRIP1 (DREB2A-INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.22 27.1 0.98 Ta.28197.1.S1_at BQ620267 - - 2e-60 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.2	0.98	TaAffx.30393.1.S1_at	CA624950	-	-	2e-12	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.
0.60	81.0	0.97	TaAffx.55881.1.S1_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.
0.60	81.0	0.97	TaAffx.55881.1.S1_x_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.
0.31	42.7	0.98	Ta.9308.2.S1_x_at	BE411983	-	-	2e+0	At3g61070	PEX11E	O.I.	H.G.	S.X.
0.31	42.7	0.98	Ta.23163.1.A1_at	CK216129	-	-	3e-1	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.
0.22	27.1	0.98	Ta.28197.1.S1_at	BQ620267	-	-	2e-60	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.0 99.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6 98.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9 98.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8 98.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7 98.7 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5 98.6 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.0	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9	98.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g47910, orthologous to the query gene, TaAffx.30393.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g47910 819403 CRR6 (chlororespiratory reduction 6) Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain. O.I. H.G. S.X.
0.63 78.1 At2g35410 818107 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast stroma, chloroplast;MPFOBA O.I. H.G. S.X.
0.61 76.7 At4g14890 827146 ferredoxin family protein F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV O.I. H.G. S.X.
0.61 76.7 At2g34860 818051 EDA3 (embryo sac development arrest 3) F:unfolded protein binding, heat shock protein binding;P:megagametogenesis;C:chloroplast thylakoid membrane, chloroplast;BOPAMF O.I. H.G. S.X.
0.61 76.7 At3g26710 822283 CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBP O.I. H.G. S.X.
0.59 74.7 At5g47110 834757 lil3 protein, putative F:molecular_function unknown;P:photosynthesis, light harvesting;C:chloroplast thylakoid membrane, chloroplast;PBO O.I. H.G. S.X.
0.58 73.8 At1g32550 840149 ferredoxin family protein F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVF O.I. H.G. S.X.
0.55 70.6 At3g55330 824699 PPL1 (PsbP-like protein 1) F:calcium ion binding;P:photosynthesis;C:in 6 components;POB O.I. H.G. S.X.
0.55 70.6 At4g18370 827564 DEG5 (DEGP PROTEASE 5) Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). O.I. H.G. S.X.
0.54 69.5 At2g48070 819419 RPH1 (RESISTANCE TO PHYTOPHTHORA 1) Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae. O.I. H.G. S.X.
0.54 69.5 At1g11860 837733 aminomethyltransferase, putative F:aminomethyltransferase activity;P:response to cadmium ion;C:in 6 components;OBMFAP O.I. H.G. S.X.
0.54 69.5 At1g44920 841058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAO O.I. H.G. S.X.
0.54 69.5 At1g43560 840939 Aty2 (Arabidopsis thioredoxin y2) F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV O.I. H.G. S.X.
0.54 69.5 At1g16880 838259 uridylyltransferase-related F:unknown;P:response to cold;C:chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope;PBO O.I. H.G. S.X.
0.53 68.6 At4g28660 828984 PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) Similar to PsbW subunit of photosystem II. O.I. H.G. S.X.
0.53 68.6 At5g51110 835185 4-alpha-hydroxytetrahydrobiopterin dehydratase F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF O.I. H.G. S.X.
0.53 68.6 At1g54500 841892 rubredoxin family protein F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP O.I. H.G. S.X.
0.53 68.6 At3g26060 822203 ATPRX Q encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus O.I. H.G. S.X.
0.52 67.4 At1g14345 837996 oxidoreductase F:oxidoreductase activity;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, membrane;OBP O.I. H.G. S.X.
0.52 67.4 At4g20360 827784 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) F:GTP binding, translation elongation factor activity, GTPase activity;P:peptidyl-cysteine S-nitrosylation;C:in 9 components;BOMFPAV O.I. H.G. S.X.
0.52 67.4 At5g30510 833138 RPS1 (RIBOSOMAL PROTEIN S1) F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA O.I. H.G. S.X.
0.51 66.3 At2g21280 816667 SULA A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. O.I. H.G. S.X.
0.51 66.3 At3g08010 819992 ATAB2 Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II. O.I. H.G. S.X.
0.51 66.3 At3g63410 825516 APG1 (ALBINO OR PALE GREEN MUTANT 1) Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis. O.I. H.G. S.X.
0.51 66.3 At3g56010 824767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P O.I. H.G. S.X.
0.51 66.3 At2g20890 816623 PSB29 Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex. O.I. H.G. S.X.
0.51 66.3 At5g13510 831195 ribosomal protein L10 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF O.I. H.G. S.X.
0.51 66.3 At4g27600 828871 pfkB-type carbohydrate kinase family protein F:kinase activity;P:unknown;C:chloroplast;BOMPAF O.I. H.G. S.X.
0.51 66.3 At3g23700 821951 S1 RNA-binding domain-containing protein F:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFA O.I. H.G. S.X.
0.50 65.3 At1g05190 839273 emb2394 (embryo defective 2394) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM O.I. H.G. S.X.
0.50 65.3 At2g27680 817314 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall;BOFPAM O.I. H.G. S.X.
0.50 65.3 At3g26900 822306 shikimate kinase family protein F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF O.I. H.G. S.X.
0.50 65.3 At3g01480 821137 CYP38 (cyclophilin 38) Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes. O.I. H.G. S.X.
0.50 65.3 At2g44920 819101 thylakoid lumenal 15 kDa protein, chloroplast F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV O.I. H.G. S.X.
0.50 65.3 At3g54210 824588 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP O.I. H.G. S.X.
0.50 65.3 At4g24770 828579 RBP31 (31-KDA RNA BINDING PROTEIN) Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). O.I. H.G. S.X.
0.50 65.3 At3g25805 822172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO O.I. H.G. S.X.
0.49 63.5 At5g52780 835355 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;BPO O.I. H.G. S.X.
0.49 63.5 At4g30950 829220 FAD6 (FATTY ACID DESATURASE 6) Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition. O.I. H.G. S.X.
0.49 63.5 At1g29070 839781 ribosomal protein L34 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOF O.I. H.G. S.X.
0.49 63.5 At5g45680 834607 FK506-binding protein 1 (FKBP13) F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BMOPFA O.I. H.G. S.X.
0.49 63.5 At3g63490 825524 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMP O.I. H.G. S.X.
0.49 63.5 At1g18170 838396 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF O.I. H.G. S.X.
0.49 63.5 At1g75350 843871 emb2184 (embryo defective 2184) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP O.I. H.G. S.X.
0.48 62.5 At1g32470 840141 glycine cleavage system H protein, mitochondrial, putative F:glycine dehydrogenase (decarboxylating) activity;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex, chloroplast;BOPMFA O.I. H.G. S.X.
0.48 62.5 At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP O.I. H.G. S.X.
0.48 62.5 At5g14320 831282 30S ribosomal protein S13, chloroplast (CS13) F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFA O.I. H.G. S.X.
0.47 61.2 At5g23120 832376 HCF136 encodes a stability and/or assembly factor of photosystem II O.I. H.G. S.X.
0.47 61.2 At1g07320 837243 RPL4 encodes a plastid ribosomal protein L4 O.I. H.G. S.X.
0.47 61.2 At1g73110 843642 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative F:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAM O.I. H.G. S.X.
0.47 61.2 At1g03680 839436 ATHM1 encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. O.I. H.G. S.X.
0.47 61.2 At3g13120 820500 30S ribosomal protein S10, chloroplast, putative F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF O.I. H.G. S.X.
0.47 61.2 At1g27480 839639 lecithin:cholesterol acyltransferase family protein / LACT family protein F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:plasma membrane, vacuole;MPOB O.I. H.G. S.X.
0.47 61.2 At1g78630 844199 emb1473 (embryo defective 1473) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP O.I. H.G. S.X.
0.47 61.2 At3g12780 820461 PGK1 (PHOSPHOGLYCERATE KINASE 1) nuclear phosphoglycerate kinase (PGK1) O.I. H.G. S.X.
0.47 61.2 At5g47840 834835 AMK2 (Adenosine monophosphate kinase) F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.47 61.2 At5g58330 835945 malate dehydrogenase (NADP), chloroplast, putative F:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFA O.I. H.G. S.X.
0.46 59.8 At2g37220 818299 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. H.G. S.X.
0.45 58.3 At5g53580 835440 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA O.I. H.G. S.X.
0.44 57.2 At5g22340 832294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. H.G. S.X.
0.44 57.2 At5g02710 831827 unknown protein F:unknown;P:unknown;C:chloroplast;OBPA O.I. H.G. S.X.
0.44 57.2 At5g14910 831343 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. H.G. S.X.
0.44 57.2 At1g22700 838876 tetratricopeptide repeat (TPR)-containing protein Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. O.I. H.G. S.X.
0.44 57.2 At2g43030 818905 ribosomal protein L3 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFP O.I. H.G. S.X.
0.44 57.2 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 O.I. H.G. S.X.
0.44 57.2 At4g34190 829567 SEP1 (STRESS ENHANCED PROTEIN 1) Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. O.I. H.G. S.X.
0.43 55.3 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM O.I. H.G. S.X.
0.43 55.3 At2g35370 818104 GDCH Encodes glycine decarboxylase complex H protein. Involved in photorespiration. O.I. H.G. S.X.
0.43 55.3 At3g04790 819639 ribose 5-phosphate isomerase-related F:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMP O.I. H.G. S.X.
0.43 55.3 At1g50320 841454 ATHX encodes a prokaryotic thioredoxin O.I. H.G. S.X.
0.42 53.9 At4g38225 829979 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.42 53.9 At2g26340 817174 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P O.I. H.G. S.X.
0.42 53.9 At4g25130 828616 peptide methionine sulfoxide reductase, putative F:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAV O.I. H.G. S.X.
0.41 52.4 At1g02910 839350 LPA1 (LOW PSII ACCUMULATION1) Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. O.I. H.G. S.X.
0.41 52.4 At3g55800 824746 SBPASE (sedoheptulose-bisphosphatase) Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. O.I. H.G. S.X.
0.41 52.4 At1g42970 840895 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. O.I. H.G. S.X.
0.40 50.8 At4g35760 829729 - F:unknown;P:unknown;C:chloroplast;OBP O.I. H.G. S.X.
0.40 50.8 At4g36390 829791 radical SAM domain-containing protein / TRAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAP O.I. H.G. S.X.
0.40 50.8 At5g57930 835904 APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) ACCUMULATION OF PHOTOSYSTEM ONE 2 O.I. H.G. S.X.
0.40 50.8 At5g58260 835938 - Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. H.G. S.X.
0.40 50.8 At3g14415 820664 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:in 6 components;OBFMPA O.I. H.G. S.X.
0.39 48.4 At4g28030 828918 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA O.I. H.G. S.X.
0.38 46.7 At3g08740 820021 elongation factor P (EF-P) family protein F:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPA O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At2g47910	819403	CRR6 (chlororespiratory reduction 6)	Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.	O.I.	H.G.	S.X.
0.63	78.1	At2g35410	818107	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast stroma, chloroplast;MPFOBA	O.I.	H.G.	S.X.
0.61	76.7	At4g14890	827146	ferredoxin family protein	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV	O.I.	H.G.	S.X.
0.61	76.7	At2g34860	818051	EDA3 (embryo sac development arrest 3)	F:unfolded protein binding, heat shock protein binding;P:megagametogenesis;C:chloroplast thylakoid membrane, chloroplast;BOPAMF	O.I.	H.G.	S.X.
0.61	76.7	At3g26710	822283	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBP	O.I.	H.G.	S.X.
0.59	74.7	At5g47110	834757	lil3 protein, putative	F:molecular_function unknown;P:photosynthesis, light harvesting;C:chloroplast thylakoid membrane, chloroplast;PBO	O.I.	H.G.	S.X.
0.58	73.8	At1g32550	840149	ferredoxin family protein	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVF	O.I.	H.G.	S.X.
0.55	70.6	At3g55330	824699	PPL1 (PsbP-like protein 1)	F:calcium ion binding;P:photosynthesis;C:in 6 components;POB	O.I.	H.G.	S.X.
0.55	70.6	At4g18370	827564	DEG5 (DEGP PROTEASE 5)	Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).	O.I.	H.G.	S.X.
0.54	69.5	At2g48070	819419	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.	O.I.	H.G.	S.X.
0.54	69.5	At1g11860	837733	aminomethyltransferase, putative	F:aminomethyltransferase activity;P:response to cadmium ion;C:in 6 components;OBMFAP	O.I.	H.G.	S.X.
0.54	69.5	At1g44920	841058	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAO	O.I.	H.G.	S.X.
0.54	69.5	At1g43560	840939	Aty2 (Arabidopsis thioredoxin y2)	F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV	O.I.	H.G.	S.X.
0.54	69.5	At1g16880	838259	uridylyltransferase-related	F:unknown;P:response to cold;C:chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope;PBO	O.I.	H.G.	S.X.
0.53	68.6	At4g28660	828984	PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN)	Similar to PsbW subunit of photosystem II.	O.I.	H.G.	S.X.
0.53	68.6	At5g51110	835185	4-alpha-hydroxytetrahydrobiopterin dehydratase	F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF	O.I.	H.G.	S.X.
0.53	68.6	At1g54500	841892	rubredoxin family protein	F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP	O.I.	H.G.	S.X.
0.53	68.6	At3g26060	822203	ATPRX Q	encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus	O.I.	H.G.	S.X.
0.52	67.4	At1g14345	837996	oxidoreductase	F:oxidoreductase activity;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, membrane;OBP	O.I.	H.G.	S.X.
0.52	67.4	At4g20360	827784	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	F:GTP binding, translation elongation factor activity, GTPase activity;P:peptidyl-cysteine S-nitrosylation;C:in 9 components;BOMFPAV	O.I.	H.G.	S.X.
0.52	67.4	At5g30510	833138	RPS1 (RIBOSOMAL PROTEIN S1)	F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA	O.I.	H.G.	S.X.
0.51	66.3	At2g21280	816667	SULA	A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.	O.I.	H.G.	S.X.
0.51	66.3	At3g08010	819992	ATAB2	Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.	O.I.	H.G.	S.X.
0.51	66.3	At3g63410	825516	APG1 (ALBINO OR PALE GREEN MUTANT 1)	Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.	O.I.	H.G.	S.X.
0.51	66.3	At3g56010	824767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P	O.I.	H.G.	S.X.
0.51	66.3	At2g20890	816623	PSB29	Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.	O.I.	H.G.	S.X.
0.51	66.3	At5g13510	831195	ribosomal protein L10 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF	O.I.	H.G.	S.X.
0.51	66.3	At4g27600	828871	pfkB-type carbohydrate kinase family protein	F:kinase activity;P:unknown;C:chloroplast;BOMPAF	O.I.	H.G.	S.X.
0.51	66.3	At3g23700	821951	S1 RNA-binding domain-containing protein	F:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFA	O.I.	H.G.	S.X.
0.50	65.3	At1g05190	839273	emb2394 (embryo defective 2394)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM	O.I.	H.G.	S.X.
0.50	65.3	At2g27680	817314	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall;BOFPAM	O.I.	H.G.	S.X.
0.50	65.3	At3g26900	822306	shikimate kinase family protein	F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF	O.I.	H.G.	S.X.
0.50	65.3	At3g01480	821137	CYP38 (cyclophilin 38)	Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.	O.I.	H.G.	S.X.
0.50	65.3	At2g44920	819101	thylakoid lumenal 15 kDa protein, chloroplast	F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV	O.I.	H.G.	S.X.
0.50	65.3	At3g54210	824588	ribosomal protein L17 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP	O.I.	H.G.	S.X.
0.50	65.3	At4g24770	828579	RBP31 (31-KDA RNA BINDING PROTEIN)	Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	O.I.	H.G.	S.X.
0.50	65.3	At3g25805	822172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO	O.I.	H.G.	S.X.
0.49	63.5	At5g52780	835355	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;BPO	O.I.	H.G.	S.X.
0.49	63.5	At4g30950	829220	FAD6 (FATTY ACID DESATURASE 6)	Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.	O.I.	H.G.	S.X.
0.49	63.5	At1g29070	839781	ribosomal protein L34 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOF	O.I.	H.G.	S.X.
0.49	63.5	At5g45680	834607	FK506-binding protein 1 (FKBP13)	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BMOPFA	O.I.	H.G.	S.X.
0.49	63.5	At3g63490	825524	ribosomal protein L1 family protein	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMP	O.I.	H.G.	S.X.
0.49	63.5	At1g18170	838396	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF	O.I.	H.G.	S.X.
0.49	63.5	At1g75350	843871	emb2184 (embryo defective 2184)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP	O.I.	H.G.	S.X.
0.48	62.5	At1g32470	840141	glycine cleavage system H protein, mitochondrial, putative	F:glycine dehydrogenase (decarboxylating) activity;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex, chloroplast;BOPMFA	O.I.	H.G.	S.X.
0.48	62.5	At1g64510	842759	ribosomal protein S6 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP	O.I.	H.G.	S.X.
0.48	62.5	At5g14320	831282	30S ribosomal protein S13, chloroplast (CS13)	F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFA	O.I.	H.G.	S.X.
0.47	61.2	At5g23120	832376	HCF136	encodes a stability and/or assembly factor of photosystem II	O.I.	H.G.	S.X.
0.47	61.2	At1g07320	837243	RPL4	encodes a plastid ribosomal protein L4	O.I.	H.G.	S.X.
0.47	61.2	At1g73110	843642	ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative	F:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAM	O.I.	H.G.	S.X.
0.47	61.2	At1g03680	839436	ATHM1	encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.	O.I.	H.G.	S.X.
0.47	61.2	At3g13120	820500	30S ribosomal protein S10, chloroplast, putative	F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF	O.I.	H.G.	S.X.
0.47	61.2	At1g27480	839639	lecithin:cholesterol acyltransferase family protein / LACT family protein	F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:plasma membrane, vacuole;MPOB	O.I.	H.G.	S.X.
0.47	61.2	At1g78630	844199	emb1473 (embryo defective 1473)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP	O.I.	H.G.	S.X.
0.47	61.2	At3g12780	820461	PGK1 (PHOSPHOGLYCERATE KINASE 1)	nuclear phosphoglycerate kinase (PGK1)	O.I.	H.G.	S.X.
0.47	61.2	At5g47840	834835	AMK2 (Adenosine monophosphate kinase)	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA	O.I.	H.G.	S.X.
0.47	61.2	At5g58330	835945	malate dehydrogenase (NADP), chloroplast, putative	F:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFA	O.I.	H.G.	S.X.
0.46	59.8	At2g37220	818299	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	H.G.	S.X.
0.45	58.3	At5g53580	835440	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA	O.I.	H.G.	S.X.
0.44	57.2	At5g22340	832294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	H.G.	S.X.
0.44	57.2	At5g02710	831827	unknown protein	F:unknown;P:unknown;C:chloroplast;OBPA	O.I.	H.G.	S.X.
0.44	57.2	At5g14910	831343	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	H.G.	S.X.
0.44	57.2	At1g22700	838876	tetratricopeptide repeat (TPR)-containing protein	Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.	O.I.	H.G.	S.X.
0.44	57.2	At2g43030	818905	ribosomal protein L3 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFP	O.I.	H.G.	S.X.
0.44	57.2	At1g79850	844324	RPS17 (RIBOSOMAL PROTEIN S17)	nuclear-encoded 30S chloroplast ribosomal protein S17	O.I.	H.G.	S.X.
0.44	57.2	At4g34190	829567	SEP1 (STRESS ENHANCED PROTEIN 1)	Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding.	O.I.	H.G.	S.X.
0.43	55.3	At4g01310	827947	ribosomal protein L5 family protein	F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM	O.I.	H.G.	S.X.
0.43	55.3	At2g35370	818104	GDCH	Encodes glycine decarboxylase complex H protein. Involved in photorespiration.	O.I.	H.G.	S.X.
0.43	55.3	At3g04790	819639	ribose 5-phosphate isomerase-related	F:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMP	O.I.	H.G.	S.X.
0.43	55.3	At1g50320	841454	ATHX	encodes a prokaryotic thioredoxin	O.I.	H.G.	S.X.
0.42	53.9	At4g38225	829979	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.42	53.9	At2g26340	817174	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P	O.I.	H.G.	S.X.
0.42	53.9	At4g25130	828616	peptide methionine sulfoxide reductase, putative	F:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAV	O.I.	H.G.	S.X.
0.41	52.4	At1g02910	839350	LPA1 (LOW PSII ACCUMULATION1)	Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.	O.I.	H.G.	S.X.
0.41	52.4	At3g55800	824746	SBPASE (sedoheptulose-bisphosphatase)	Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.	O.I.	H.G.	S.X.
0.41	52.4	At1g42970	840895	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase.	O.I.	H.G.	S.X.
0.40	50.8	At4g35760	829729	-	F:unknown;P:unknown;C:chloroplast;OBP	O.I.	H.G.	S.X.
0.40	50.8	At4g36390	829791	radical SAM domain-containing protein / TRAM domain-containing protein	F:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAP	O.I.	H.G.	S.X.
0.40	50.8	At5g57930	835904	APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)	ACCUMULATION OF PHOTOSYSTEM ONE 2	O.I.	H.G.	S.X.
0.40	50.8	At5g58260	835938	-	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	H.G.	S.X.
0.40	50.8	At3g14415	820664	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:in 6 components;OBFMPA	O.I.	H.G.	S.X.
0.39	48.4	At4g28030	828918	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA	O.I.	H.G.	S.X.
0.38	46.7	At3g08740	820021	elongation factor P (EF-P) family protein	F:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPA	O.I.	H.G.	S.X.

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Gene ID	TaAffx.30393.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12)
Module size	6 genes
NF	0.46
%ile	72.0

Co-expression analysis

Gene ID TaAffx.30393.1.S1_at Gene name Homology with ArabidopsisSimilar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12) Module size 6 genes NF 0.46 %ile 72.0

Co-expressed genes

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Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID TaAffx.30393.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=2e-12)

Module size 6 genes

NF 0.46

%ile 72.0

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays