Co-expression analysis

Gene ID	TaAffx.29673.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g14240: - (HF=7e+0)
Module size	6 genes
NF	0.52
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.95	TaAffx.29673.1.S1_at	CA637588	-	-	7e+0	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	TaAffx.65688.1.S1_at	BJ232502	-	-	2e+1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.95	TaAffx.107438.1.S1_at	CA699780	-	-	1e-2	At3g26110	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.94	Ta.12290.2.S1_at	BJ260055	-	-	4e-1	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.105660.1.S1_at	CA731441	-	-	1e-3	At3g01015	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.4	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
11.7	99.3	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
11.3	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.6	99.2	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.9	99.1	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.7	98.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1123.1.A1_at, orthologous to the query gene, TaAffx.29673.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	ZmAffx.1123.1.A1_at	At5g14240	-	-	1e+1	At5g16890	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	ZmAffx.823.1.S1_at	At5g14240	-	-	1e-5	At3g07080	membrane protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.8814.1.A1_at	At5g14240	-	-	5e+0	At1g10095	protein prenyltransferase	O.I.	H.G.	S.X.	Please select
0.19	12.8	ZmAffx.1035.1.S1_at	At5g14240	-	-	3e+0	At4g38400	ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.15077.1.A1_a_at	At5g14240	-	-	2e+0	At5g08315	-	O.I.	H.G.	S.X.	Please select
0.08	3.4	ZmAffx.106.1.A1_at	At5g14240	-	-	3e+0	At4g14060	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.08	3.4	Zm.18141.1.S1_at	At5g14240	-	-	5e+0	At4g36000	-	O.I.	H.G.	S.X.	Please select
0.08	3.4	Zm.3200.2.A1_at	At5g14240	hypothetical protein LOC100279839	-	8e-5	At1g74320	choline kinase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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