Co-expression analysis

Gene ID TaAffx.29472.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g06839: bZIP family transcription factor (HF=1e+0)
Module size 6 genes
NF 0.24
%ile 40.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.78TaAffx.29472.1.S1_atCA642135--1e+0At5g06839bZIP family transcription factorO.I.H.G.S.X.
0.4666.80.94Ta.3083.2.A1_atBJ254365--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.4362.20.91Ta.497.3.S1_x_atCA722566--7e-8At3g23660transport protein, putativeO.I.H.G.S.X.
0.1517.10.94TaAffx.38268.1.A1_atBJ242361--1e+0At1g21326VQ motif-containing proteinO.I.H.G.S.X.
0.1314.60.94Ta.2593.3.S1_x_atCA665053--4e-1At4g23980ARF9 (AUXIN RESPONSE FACTOR 9)O.I.H.G.S.X.
0.1011.30.94Ta.18931.2.S1_x_atCA656734--2e-11At5g47870unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.399.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.798.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM138205genotype H8 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.9061.1.A1_at, orthologous to the query gene, TaAffx.29472.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5976.1Zm.9061.1.A1_atAt5g06839--5e+0At1g50560CYP705A25O.I.H.G.S.X.
0.5976.1Zm.9060.1.A1_atAt5g06839hypothetical protein LOC100274301-1e+0At5g57370unknown proteinO.I.H.G.S.X.
0.4251.3Zm.19214.1.S1_atAt5g06839ankyrin repeat domain-containing protein 2-1e-2At3g59060PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)O.I.H.G.S.X.
0.2724.6Zm.19095.1.S1_atAt5g06839hypothetical protein LOC100274082-6e-3At2g23840HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.2318.6Zm.17656.1.S1_atAt5g06839--5e+0At4g08151unknown proteinO.I.H.G.S.X.
0.158.6Zm.8639.1.A1_atAt5g06839--2e+1At5g58600PMR5 (POWDERY MILDEW RESISTANT 5)O.I.H.G.S.X.
0.147.7Zm.8846.1.A1_atAt5g06839--4e+0At3g29250copper ion binding / oxidoreductaseO.I.H.G.S.X.
0.147.7Zm.18038.1.S1_atAt5g06839--2e+1At5g66700HB53O.I.H.G.S.X.
0.115.3Zm.1910.1.A1_atAt5g06839hypothetical protein LOC100194078-3e+0At4g02160unknown proteinO.I.H.G.S.X.
0.094.0Zm.5070.1.A1_atAt5g06839hypothetical protein LOC100193023-2e-16At1g22950iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.094.0Zm.17271.1.A1_a_atAt5g06839hypothetical protein LOC100191540-6e-18At5g5265040S ribosomal protein S10 (RPS10C)O.I.H.G.S.X.
0.051.9Zm.3783.1.S1_atAt5g06839Betaine aldehyde dehydrogenase-6e-4At3g48170ALDH10A9O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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