Co-expression analysis

Gene ID TaAffx.29472.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g06839: bZIP family transcription factor (HF=1e+0)
Module size 6 genes
NF 0.24
%ile 40.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.78TaAffx.29472.1.S1_atCA642135--1e+0At5g06839bZIP family transcription factorO.I.H.G.S.X.
0.4666.80.94Ta.3083.2.A1_atBJ254365--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.4362.20.91Ta.497.3.S1_x_atCA722566--7e-8At3g23660transport protein, putativeO.I.H.G.S.X.
0.1517.10.94TaAffx.38268.1.A1_atBJ242361--1e+0At1g21326VQ motif-containing proteinO.I.H.G.S.X.
0.1314.60.94Ta.2593.3.S1_x_atCA665053--4e-1At4g23980ARF9 (AUXIN RESPONSE FACTOR 9)O.I.H.G.S.X.
0.1011.30.94Ta.18931.2.S1_x_atCA656734--2e-11At5g47870unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.399.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.798.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM138205genotype H8 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.221693.1.S1_x_at, orthologous to the query gene, TaAffx.29472.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6187.0PtpAffx.221693.1.S1_x_atAt5g06839hypothetical protein-1e-1At5g52440HCF106O.I.H.G.S.X.
0.4369.7PtpAffx.40097.2.A1_atAt5g06839hypothetical protein-5e-6At1g12640membrane bound O-acyl transferase (MBOAT) family proteinO.I.H.G.S.X.
0.4067.0Ptp.1413.1.A1_atAt5g06839hypothetical protein-4e-32At4g09580-O.I.H.G.S.X.
0.3559.7PtpAffx.201008.1.S1_atAt5g06839hypothetical protein-1e-9At5g40710zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2850.5Ptp.2699.1.A1_s_atAt5g06839vacuolar H+-translocating inorganic pyrophosphatase-1e-100At1g15690AVP1O.I.H.G.S.X.
0.2747.1PtpAffx.746.1.A1_atAt5g06839--2e-29At3g17240mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)O.I.H.G.S.X.
0.2543.6PtpAffx.5430.3.S1_a_atAt5g06839hypothetical protein-1e-112At1g19910AVA-P2O.I.H.G.S.X.
0.2340.5PtpAffx.203446.1.S1_atAt5g06839hypothetical protein-1e-39At4g13700PAP23 (PURPLE ACID PHOSPHATASE 23)O.I.H.G.S.X.
0.2340.5Ptp.6875.1.S1_s_atAt5g06839hypothetical protein-1e-22At1g31812ACBP6 (acyl-CoA-binding protein 6)O.I.H.G.S.X.
0.2238.3PtpAffx.205970.1.S1_atAt5g06839hypothetical protein-8e-1At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.2034.6PtpAffx.205091.1.S1_atAt5g06839hypothetical protein-3e-57At2g27900unknown proteinO.I.H.G.S.X.
0.1932.7PtpAffx.34296.2.S1_atAt5g06839hypothetical protein-8e-6At3g28140calmodulin-binding proteinO.I.H.G.S.X.
0.1830.8PtpAffx.9962.3.S1_atAt5g06839hypothetical protein-8e+0At3g11280myb family transcription factorO.I.H.G.S.X.
0.1729.1PtpAffx.217971.1.S1_x_atAt5g06839hypothetical protein-8e-4At2g30460-O.I.H.G.S.X.
0.1729.1PtpAffx.134116.1.A1_atAt5g06839hypothetical protein-6e+0At3g52630-O.I.H.G.S.X.
0.1626.9PtpAffx.454.1.A1_a_atAt5g06839--6e-4At1g20440COR47 (COLD-REGULATED 47)O.I.H.G.S.X.
0.1423.5PtpAffx.212284.1.S1_atAt5g06839hypothetical protein-7e-54At3g47390cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.1321.6PtpAffx.109947.1.A1_atAt5g06839hypothetical protein-1e+0At1g10590DNA-binding protein-relatedO.I.H.G.S.X.
0.1118.1PtpAffx.3125.3.A1_atAt5g06839hypothetical protein-6e-43At1g65410ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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