Co-expression analysis

Gene ID TaAffx.29472.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g06839: bZIP family transcription factor (HF=1e+0)
Module size 6 genes
NF 0.24
%ile 40.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.78TaAffx.29472.1.S1_atCA642135--1e+0At5g06839bZIP family transcription factorO.I.H.G.S.X.
0.4666.80.94Ta.3083.2.A1_atBJ254365--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.4362.20.91Ta.497.3.S1_x_atCA722566--7e-8At3g23660transport protein, putativeO.I.H.G.S.X.
0.1517.10.94TaAffx.38268.1.A1_atBJ242361--1e+0At1g21326VQ motif-containing proteinO.I.H.G.S.X.
0.1314.60.94Ta.2593.3.S1_x_atCA665053--4e-1At4g23980ARF9 (AUXIN RESPONSE FACTOR 9)O.I.H.G.S.X.
0.1011.30.94Ta.18931.2.S1_x_atCA656734--2e-11At5g47870unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.399.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.798.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM138205genotype H8 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig344_at, orthologous to the query gene, TaAffx.29472.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1Contig344_atAt5g06839--5e-1At1g71520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.7187.1Contig665_s_atAt5g06839--2e-20At1g07820histone H4O.I.H.G.S.X.
0.5066.9HA28M24r_s_atAt5g06839--7e-8At5g43010RPT4AO.I.H.G.S.X.
0.5066.9rbaal18e24_s_atAt5g06839--9e+0At4g06536-O.I.H.G.S.X.
0.4356.4HS05E04u_s_atAt5g06839--4e-3At5g35590PAA1 (PROTEASOME ALPHA SUBUNIT A 1)O.I.H.G.S.X.
0.3037.0Contig4893_atAt5g06839--2e-25At3g02780IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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