Co-expression analysis

Gene ID TaAffx.28401.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g21580: cobalt ion transmembrane transporter (HF=9e-1)
Module size 6 genes
NF 0.12
%ile 24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.81TaAffx.28401.2.S1_atCA660599--9e-1At3g21580cobalt ion transmembrane transporterO.I.H.G.S.X.
0.1922.40.92Ta.11296.3.S1_x_atCA659571--1e+0At1g77200AP2 domain-containing transcription factor TINY, putativeO.I.H.G.S.X.
0.1618.20.94TaAffx.37703.1.S1_atBJ268324--1e+1At5g59990-O.I.H.G.S.X.
0.1011.30.92TaAffx.57082.1.S1_atCA637040--4e+0At5g55508unknown proteinO.I.H.G.S.X.
0.067.60.94TaAffx.105451.1.S1_atCA734135--1e+0At3g06730thioredoxin family proteinO.I.H.G.S.X.
0.045.80.94TaAffx.119601.1.S1_atBJ266980--9e+0At5g59950RNA and export factor-binding protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.399.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
7.898.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.697.8GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.997.3GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM298085Crown tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.8571.1.A1_at, orthologous to the query gene, TaAffx.28401.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5674.4Zm.8571.1.A1_atAt3g21580hypothetical protein LOC100276153-1e-3At4g18205-O.I.H.G.S.X.
0.5875.1Zm.18060.1.A1_atAt3g21580--2e+0At4g07515unknown proteinO.I.H.G.S.X.
0.4658.4Zm.11725.1.A1_atAt3g21580--3e+0At4g05430-O.I.H.G.S.X.
0.4658.4Zm.8105.1.A1_atAt3g21580--1e-3At4g37640ACA2 (CALCIUM ATPASE 2)O.I.H.G.S.X.
0.4352.8Zm.8102.1.A1_atAt3g21580IDP608 protein /// transmembrane BAX inhibitor motif-containing protein 4 /// transmembrane BAX inhibitor motif-containing protein 4-4e-2At3g63310glutamate bindingO.I.H.G.S.X.
0.4048.5Zm.8106.1.S1_atAt3g21580hypothetical protein LOC100191603-5e-6At2g43020ATPAO2 (Polyamine oxidase 2)O.I.H.G.S.X.
0.3336.0Zm.8514.1.A1_atAt3g21580PREG-like protein-5e+0At5g35525unknown proteinO.I.H.G.S.X.
0.2216.9Zm.5498.1.S1_atAt3g21580Hypothetical protein LOC100194112-1e-41At5g3553040S ribosomal protein S3 (RPS3C)O.I.H.G.S.X.
0.2115.5Zm.17113.1.S1_atAt3g21580--2e-19At5g40200DegP9 (DegP protease 9)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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