CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.28401.2.S1_at

Gene name
Homology with Arabidopsis Similar to At3g21580: cobalt ion transmembrane transporter (HF=9e-1)

Module size 6 genes

NF 0.12

%ile 24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.81 TaAffx.28401.2.S1_at CA660599 - - 9e-1 At3g21580 cobalt ion transmembrane transporter O.I. H.G. S.X.
0.19 22.4 0.92 Ta.11296.3.S1_x_at CA659571 - - 1e+0 At1g77200 AP2 domain-containing transcription factor TINY, putative O.I. H.G. S.X.
0.16 18.2 0.94 TaAffx.37703.1.S1_at BJ268324 - - 1e+1 At5g59990 - O.I. H.G. S.X.
0.10 11.3 0.92 TaAffx.57082.1.S1_at CA637040 - - 4e+0 At5g55508 unknown protein O.I. H.G. S.X.
0.06 7.6 0.94 TaAffx.105451.1.S1_at CA734135 - - 1e+0 At3g06730 thioredoxin family protein O.I. H.G. S.X.
0.04 5.8 0.94 TaAffx.119601.1.S1_at BJ266980 - - 9e+0 At5g59950 RNA and export factor-binding protein, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.3 99.0 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.8 98.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.9 97.3 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.4 96.8 GSM298093 Crown tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM298085 Crown tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os01g0371400, orthologous to the query gene, TaAffx.28401.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os01g0371400 At3g21580 - Glutathione S-transferase, C-terminal domaincontaining protein 5e-3 At3g62760 ATGSTF13 O.I. H.G. S.X.
0.63 82.7 Os06g0361200 At3g21580 - - 2e+0 At5g41910 RNA polymerase II mediator complex protein-related O.I. H.G. S.X.
0.57 77.0 Os11g0702800 At3g21580 - - 1e+0 At5g64816 unknown protein O.I. H.G. S.X.
0.50 68.0 Os04g0178500 At3g21580 - - 5e+0 At5g28780 unknown protein O.I. H.G. S.X.
0.50 68.0 Os11g0208600 At3g21580 - Hypothetical protein 4e+0 At2g29420 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) O.I. H.G. S.X.
0.47 62.3 Os07g0497950 At3g21580 - - 2e+0 At2g16860 GCIP-interacting family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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