Co-expression analysis

Gene ID	TaAffx.28401.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g21580: cobalt ion transmembrane transporter (HF=9e-1)
Module size	6 genes
NF	0.12
%ile	24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.81	TaAffx.28401.2.S1_at	CA660599	-	-	9e-1	At3g21580	cobalt ion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.92	Ta.11296.3.S1_x_at	CA659571	-	-	1e+0	At1g77200	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	TaAffx.37703.1.S1_at	BJ268324	-	-	1e+1	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.92	TaAffx.57082.1.S1_at	CA637040	-	-	4e+0	At5g55508	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.94	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.94	TaAffx.119601.1.S1_at	BJ266980	-	-	9e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	99.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.8	98.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.9	97.3	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig21026_at, orthologous to the query gene, TaAffx.28401.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig21026_at	At3g21580	-	-	2e+0	At2g30870	GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig10115_at	At3g21580	-	-	7e-1	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig19027_at	At3g21580	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig21277_at	At3g21580	-	-	8e-12	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig16664_at	At3g21580	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig21045_at	At3g21580	-	-	4e+0	At5g51130	methyltransferase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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