Co-expression analysis

Gene ID	TaAffx.27697.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g21570: unknown protein (HF=4e+0)
Module size	31 genes
NF	0.38
%ile	61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.90	TaAffx.27697.1.S1_at	CA672221	-	-	4e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.93	TaAffx.57838.1.S1_at	CA624658	-	-	4e+0	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.92	TaAffx.85507.1.S1_s_at	CA622147	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.93	TaAffx.49612.2.A1_at	CA498714	-	-	5e-1	At1g06980	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.95	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.93	Ta.17343.1.S1_at	CA619861	-	-	1e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	TaAffx.29732.1.S1_at	CA636473	-	-	7e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.95	TaAffx.25008.1.S1_at	CA708299	-	-	1e+1	At5g24370	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.93	TaAffx.30726.1.S1_at	CA622623	-	-	1e+1	At5g20500	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.93	Ta.22060.1.A1_at	BG906078	-	-	2e-1	At2g20690	lumazine-binding family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.20799.1.S1_at	CA487003	-	-	3e-1	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.58227.1.S1_at	CA621342	-	-	1e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.129082.2.S1_at	CA610797	-	-	4e-3	At1g58280	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.112158.1.S1_x_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.92	TaAffx.116468.1.S1_at	CA696388	-	-	4e+0	At3g07005	LCR43 (Low-molecular-weight cysteine-rich 43)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.93	TaAffx.78434.1.S1_at	CA732727	-	-	4e+0	At1g55546	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	TaAffx.86790.1.S1_at	CA600461	-	-	1e+1	At5g18362	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.119035.1.A1_at	BJ295436	-	-	1e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	Ta.26748.1.S1_at	CD491037	-	-	4e-1	At2g38630	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.93	TaAffx.65462.1.S1_at	BJ245082	-	-	9e-1	At3g18300	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.115939.2.S1_at	CA677586	-	-	7e-2	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	TaAffx.35493.1.S1_at	BQ606743	-	-	4e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.93	TaAffx.34241.2.S1_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1	96.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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