Co-expression analysis

Gene ID	TaAffx.27578.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g08570: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (HF=1e+0)
Module size	12 genes
NF	0.14
%ile	27.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	0.84	TaAffx.27578.1.S1_at	CA673741	-	-	1e+0	At4g08570	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.90	TaAffx.7092.1.S1_s_at	CA668596	-	-	1e+1	At5g17130	cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.89	Ta.3591.2.S1_at	CA674389	-	-	7e+0	At5g14450	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.85	TaAffx.77819.1.S1_at	CA742422	-	-	8e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.90	TaAffx.107456.1.S1_at	CA699572	-	-	4e+0	At1g20870	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.91	TaAffx.27359.1.S1_at	CA677883	-	-	4e+0	At3g09863	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.92	TaAffx.85685.1.S1_at	CA620541	-	-	3e+0	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.92	Ta.22988.1.S1_at	CA692783	-	-	3e+0	At1g70830	MLP28 (MLP-LIKE PROTEIN 28)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.90	Ta.20380.1.S1_at	CA679288	-	-	9e-4	At3g58040	SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.89	Ta.906.2.A1_at	CA693874	-	-	4e+0	At1g29520	AWPM-19-like membrane family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.92	TaAffx.112556.1.S1_at	CA622998	-	-	4e+0	At1g67760	ATP binding / protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.88	Ta.5287.1.S1_at	CD879542	-	-	5e-3	At2g07640	D2,D4-dienoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.4	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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