Co-expression analysis

Gene ID	TaAffx.26388.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g21670: nitrate transporter (NTP3) (HF=2e-1)
Module size	23 genes
NF	0.42
%ile	66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.93	TaAffx.26388.1.S1_at	CA689349	-	-	2e-1	At3g21670	nitrate transporter (NTP3)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.94	Ta.6973.2.S1_at	BJ313299	-	-	2e-13	At4g22120	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.96	TaAffx.78911.1.S1_at	AL823188	-	-	4e+0	At5g17130	cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.96	Ta.2491.1.S1_at	BG904040	-	-	1e-12	At5g17400	ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.96	Ta.5622.2.S1_at	BJ245815	-	-	2e-28	At5g22510	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.95	TaAffx.109200.1.S1_at	CA678784	-	-	2e+0	At4g00390	transcription regulator	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.96	Ta.2946.3.S1_at	BJ207850	-	-	4e+0	At3g25719	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.95	TaAffx.28994.1.S1_at	CA652867	-	-	3e-10	At5g49830	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	TaAffx.38003.1.S1_at	BJ255496	-	-	1e+0	At1g26220	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.97	TaAffx.7798.2.S1_at	CA649964	-	-	1e-3	At4g28420	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.4073.3.S1_at	CA661691	-	-	2e-2	At1g09500	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.1908.2.S1_a_at	CA604767	GTP cyclohydrolase 1 isoform TaC /// GTP cyclohydrolase 1 isoform TaA	-	2e-5	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	TaAffx.120540.2.S1_s_at	CA659040	-	-	2e-2	At5g62810	PEX14	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.4674.1.S1_s_at	CA697964	-	-	4e+0	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.4913.3.S1_a_at	CA629901	-	-	9e-1	At5g17130	cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	TaAffx.115240.1.S1_at	BJ270543	-	-	2e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	TaAffx.112453.1.S1_at	CA625557	-	-	1e-1	At1g76820	GTP binding / GTPase	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.782.2.S1_at	CA728807	-	-	2e-2	At1g10140	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.96	TaAffx.82160.1.S1_at	CA676735	-	-	1e+0	At4g20280	TAF11 (TBP-ASSOCIATED FACTOR 11)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	TaAffx.121444.1.S1_x_at	CD874911	-	-	2e-12	At1g04620	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.23339.3.S1_a_at	CA671220	-	-	5e-8	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.97	Ta.5599.1.S1_at	CK213331	-	-	6e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	TaAffx.112453.1.S1_s_at	CA625557	-	-	1e-1	At1g76820	GTP binding / GTPase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.5	98.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250904	TcLr1_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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