Co-expression analysis

Gene ID	TaAffx.25948.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g43350: ATGPX3 (GLUTATHIONE PEROXIDASE 3) (HF=1e-1)
Module size	7 genes
NF	0.23
%ile	38.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.87	TaAffx.25948.1.S1_at	CA693937	-	-	1e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.87	Ta.20361.1.A1_at	BJ282460	-	-	7e-1	At1g12070	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.90	Ta.8579.1.A1_at	BQ162082	-	-	4e-4	At2g45040	matrix metalloproteinase	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.91	TaAffx.43678.1.S1_x_at	BF200239	-	-	9e+0	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.90	Ta.6955.1.S1_at	BJ313017	-	-	6e-1	At2g34000	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.90	Ta.24601.1.S1_at	BQ483742	-	-	1e+0	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.87	Ta.8608.1.A1_x_at	BQ162121	-	-	4e+0	At3g27590	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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