Co-expression analysis

Gene ID	TaAffx.25517.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g15270: SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5) (HF=1e+0)
Module size	13 genes
NF	0.36
%ile	58.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.91	TaAffx.25517.1.S1_at	CA698894	-	-	1e+0	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	TaAffx.69044.1.S1_at	CA643546	-	-	2e-5	At5g66880	SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	Ta.11314.2.S1_x_at	CA619157	-	-	4e+0	At5g40500	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.99206.1.S1_at	CA727631	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	TaAffx.113218.1.S1_at	CA617187	-	-	5e-3	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.93	Ta.15771.1.S1_at	CA486817	-	-	5e-6	At3g47490	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.38217.1.S1_x_at	BJ244494	-	-	7e+0	At5g11690	ATTIM17-3	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	TaAffx.51452.1.S1_at	CA724758	-	-	1e+1	At5g56369	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	TaAffx.38406.1.S1_at	BJ234189	-	-	4e+0	At5g64260	EXL2 (EXORDIUM LIKE 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.51452.1.S1_x_at	CA724758	-	-	1e+1	At5g56369	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	TaAffx.78517.1.S1_at	CA731451	-	-	4e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.92	TaAffx.52853.1.S1_at	CA597526	-	-	7e-5	At3g01630	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	99.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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