Co-expression analysis

Gene ID TaAffx.23792.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g33160: ubiquitin-protein ligase (HF=2e-2)
Module size 6 genes
NF 0.04
%ile 12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.92TaAffx.23792.1.S1_atCA730390--2e-2At4g33160ubiquitin-protein ligaseO.I.H.G.S.X.
0.4058.40.97Ta.7559.2.S1_a_atCA640276--4e+0At5g42420transporter-relatedO.I.H.G.S.X.
0.2024.00.97TaAffx.87003.1.S1_s_atCA597427--4e-3At4g19150ankyrin repeat family proteinO.I.H.G.S.X.
0.1415.80.96Ta.16602.2.S1_atCA697920--1e+0At1g65620AS2 (ASYMMETRIC LEAVES 2)O.I.H.G.S.X.
0.1415.80.96Ta.28757.1.S1_atAJ612432--3e-10At2g43970La domain-containing proteinO.I.H.G.S.X.
0.012.40.96Ta.3227.2.S1_x_atCK198384alternative splicing regulator-1e-17At1g09140SF2/ASF-like splicing modulator (SRP30)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.799.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
10.099.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.499.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.798.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.692.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.391.5GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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