Co-expression analysis

Gene ID	TaAffx.23792.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g33160: ubiquitin-protein ligase (HF=2e-2)
Module size	6 genes
NF	0.04
%ile	12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.92	TaAffx.23792.1.S1_at	CA730390	-	-	2e-2	At4g33160	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.7559.2.S1_a_at	CA640276	-	-	4e+0	At5g42420	transporter-related	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.16602.2.S1_at	CA697920	-	-	1e+0	At1g65620	AS2 (ASYMMETRIC LEAVES 2)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.28757.1.S1_at	AJ612432	-	-	3e-10	At2g43970	La domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.96	Ta.3227.2.S1_x_at	CK198384	alternative splicing regulator	-	1e-17	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.0	99.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.4	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7	98.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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