Co-expression analysis

Gene ID TaAffx.22930.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g24155: squalene monooxygenase, putative / squalene epoxidase, putative (HF=9e+0)
Module size 6 genes
NF 0.02
%ile 7.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.79TaAffx.22930.1.S1_atCA743065--9e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.078.60.94TaAffx.34241.2.S1_atCA722326--4e+0At5g51960-O.I.H.G.S.X.
0.067.60.94TaAffx.64591.1.S1_atBJ288225--1e+0At1g19010unknown proteinO.I.H.G.S.X.
0.023.60.95Ta.1709.2.S1_a_atCA611032--6e-57At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.012.40.93Ta.28727.1.A1_x_atCA722823--7e-2At3g08690UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)O.I.H.G.S.X.
0.012.40.94Ta.23895.1.S1_atCK205337--3e-55At4g34720AVA-P1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
18.899.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
18.199.7GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
8.999.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.098.5GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
2.793.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.793.3GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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