Co-expression analysis

Gene ID TaAffx.22913.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=8e+0)
Module size 17 genes
NF 0.27
%ile 44.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.73TaAffx.22913.1.S1_atCA743329--8e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.5678.60.89TaAffx.30951.1.S1_atCA620788--2e+1At4g30070LCR59 (Low-molecular-weight cysteine-rich 59)O.I.H.G.S.X.
0.5678.60.91TaAffx.58364.1.S1_atCA620231--2e+1At4g10610CID12O.I.H.G.S.X.
0.4969.70.88TaAffx.31195.1.S1_x_atCA618611--8e-1At1g21770-O.I.H.G.S.X.
0.4666.80.91Ta.2752.1.A1_x_atCA680240ribulosebisphosphate carboxylase small subunit-7e-9At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.4565.20.87Ta.10048.3.S1_atBJ232348--3e-1At4g19270unknown proteinO.I.H.G.S.X.
0.4260.90.91TaAffx.5994.1.S1_atCA693717--1e+1At5g41400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3956.10.88Ta.30830.1.S1_atCN008999--1e+0At4g03170DNA bindingO.I.H.G.S.X.
0.3854.70.90Ta.19055.1.A1_atCK205684--8e-23At4g22130SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)O.I.H.G.S.X.
0.3346.90.87TaAffx.28550.1.S1_atCA658809--2e-11At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.3142.70.94TaAffx.27716.1.S1_x_atCA671981--1e+0At5g13870EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)O.I.H.G.S.X.
0.2939.20.92TaAffx.27716.1.S1_atCA671981--1e+0At5g13870EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)O.I.H.G.S.X.
0.2633.60.95Ta.28276.3.A1_atCA635278--1e+0At1g69935SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1)O.I.H.G.S.X.
0.2532.10.91Ta.7168.3.S1_atCA745143--6e-34At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.2227.10.94Ta.128.1.A1_atU76747.1Tap-5e+0At5g46730glycine-rich proteinO.I.H.G.S.X.
0.2227.10.91TaAffx.108865.1.S1_atCA683179--3e+0At3g15357unknown proteinO.I.H.G.S.X.
0.067.60.83TaAffx.123925.1.S1_atCA679093--2e+1At4g14430IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
9.899.1GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.098.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
3.294.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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