Co-expression analysis

Gene ID	TaAffx.2246.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g68140: - (HF=2e-4)
Module size	10 genes
NF	0.58
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	0.98	TaAffx.2246.1.S1_at	BE420056	-	-	2e-4	At1g68140	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.6839.1.S1_at	BT009462.1	-	-	3e+0	At2g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.12107.1.A1_at	BJ218492	-	-	1e+0	At4g04580	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.98	Ta.4582.1.S1_at	CK172043	-	-	3e-23	At3g52140	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.2982.2.S1_x_at	CK206222	-	-	8e-29	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.98	Ta.1529.1.S1_at	CK153906	-	-	5e-21	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.98	Ta.8547.1.S1_at	M95747.1	initiation factor (iso)4f p82 subunit	-	8e-15	At5g57870	eukaryotic translation initiation factor 4F, putative / eIF-4F, putative	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.2136.1.S1_at	BJ320333	-	-	7e-9	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.2490.1.S1_at	BJ250631	-	-	4e-46	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.4129.1.S1_at	CD913483	-	-	9e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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