Co-expression analysis

Gene ID	TaAffx.18815.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g07030: aspartic-type endopeptidase (HF=3e-5)
Module size	30 genes
NF	0.32
%ile	52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.93	TaAffx.18815.1.S1_at	BJ314758	-	-	3e-5	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.94	Ta.21787.1.S1_at	CA702580	-	-	3e-5	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	Ta.27369.2.S1_at	CD915888	-	-	2e+0	At2g03310	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	TaAffx.71607.1.A1_at	CK208297	-	-	2e+1	At3g14670	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.21957.1.S1_at	CK212193	-	-	6e+0	At2g21185	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.6416.1.S1_at	CK154083	-	-	5e-15	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.9925.2.S1_x_at	BJ234804	-	-	7e-1	At5g42232	-	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	Ta.13256.1.A1_a_at	CD454115	-	-	2e+1	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.12753.1.S1_at	CD926424	-	-	5e+0	At1g18130	tRNA synthetase-related / tRNA ligase-related	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.9925.2.S1_at	BJ234804	-	-	7e-1	At5g42232	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.28003.1.S1_x_at	CD928990	-	-	2e-7	At1g01300	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	Ta.14046.1.S1_s_at	CD453776	-	-	5e-1	At1g58150	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.28368.2.S1_at	CB307729	Type 1 non specific lipid transfer protein precursor	-	2e+0	At4g22250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.18982.1.S1_at	CA628383	-	-	2e+0	At1g58100	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.9925.1.A1_a_at	BE516413	-	-	1e+1	At5g14920	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.21795.1.S1_at	CA702644	-	-	7e-1	At2g35520	DAD2 (DEFENDER AGAINST CELL DEATH 2)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	Ta.6830.1.S1_at	BJ309335	-	-	8e+0	At3g18050	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.96	Ta.6102.1.A1_at	BJ303621	-	-	1e+0	At3g01480	CYP38 (cyclophilin 38)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.2809.1.S1_s_at	CD935951	-	-	7e+0	At4g22460	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.28055.2.S1_at	CA705590	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.6961.1.S1_at	CA666763	-	-	4e-34	At1g64650	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.9603.1.S1_s_at	BJ225210	-	-	1e+1	At4g14272	-	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.27708.1.S1_at	D37942.1	protein H2B-6	-	3e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.14062.2.S1_a_at	BJ218508	-	-	1e+0	At2g30615	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.28055.2.S1_x_at	CA705590	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	Ta.10883.2.S1_at	CD926911	-	-	2e+0	At4g14276	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	Ta.23801.1.S1_at	CA704514	-	-	5e+0	At1g65445	transferase-related	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	Ta.18110.1.A1_at	CA629110	-	-	3e+0	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	Ta.27708.1.S1_x_at	D37942.1	protein H2B-6	-	3e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.29357.1.A1_at	BJ320682	-	-	6e-13	At1g63260	TET10 (TETRASPANIN10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.6	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.0	94.3	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.4	92.0	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.2	91.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.2	91.0	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.1	90.3	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.0	89.7	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.0	89.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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