Co-expression analysis

Gene ID TaAffx.15675.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g35700: ERF38 (ERF FAMILY PROTEIN 38) (HF=2e-13)
Module size 9 genes
NF 0.36
%ile 58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.80.95TaAffx.15675.1.A1_atCD490321--2e-13At2g35700ERF38 (ERF FAMILY PROTEIN 38)O.I.H.G.S.X.
0.5072.40.95TaAffx.29351.1.S1_s_atCA644657--4e+0At2g25700ASK3 (ARABIDOPSIS SKP1-LIKE 3)O.I.H.G.S.X.
0.4869.00.96Ta.22563.1.S1_atBJ214726--5e-2At4g24220VEP1 (VEIN PATTERNING 1)O.I.H.G.S.X.
0.4260.90.96Ta.3283.1.S1_atBQ838672--2e-2At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.3956.10.95Ta.22563.1.S1_x_atBJ214726--5e-2At4g24220VEP1 (VEIN PATTERNING 1)O.I.H.G.S.X.
0.3040.90.95Ta.1839.1.S1_atCA603626fasciclin-like protein FLA26-2e-4At2g35860FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)O.I.H.G.S.X.
0.3040.90.95Ta.1839.1.S1_x_atCA603626fasciclin-like protein FLA26-2e-4At2g35860FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)O.I.H.G.S.X.
0.2939.20.96Ta.3219.1.S1_atCD939114--3e-5At5g47870unknown proteinO.I.H.G.S.X.
0.2227.10.95Ta.13292.1.S1_s_atCD373872--2e-2At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.699.4GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.398.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.098.0GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.597.8GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.597.8GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM143504Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM298088Crown tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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