Co-expression analysis

Gene ID	TaAffx.15327.1.S1_at
Gene name	Glucan endo-1,3-beta-D-glucosidase
Homology with Arabidopsis	Similar to At2g22850: AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) (HF=3e+0)
Module size	6 genes
NF	0.88
%ile	99.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.97	TaAffx.15327.1.S1_at	AJ610775	Glucan endo-1,3-beta-D-glucosidase	-	3e+0	At2g22850	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.30501.1.S1_at	CK205943	-	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.28.1.S1_at	Y18212.1	glucan endo-1,3-beta-D-glucosidase	-	6e-1	At3g23360	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.98	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.27762.1.S1_x_at	AF384146.1	thaumatin-like protein	-	2e-1	At1g64185	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.7	99.2	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7	98.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.9	98.0	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.4	97.7	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6	97.0	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0	96.3	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage