Co-expression analysis

Gene ID TaAffx.14777.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g49580: LSU1 (RESPONSE TO LOW SULFUR 1) (HF=1e+0)
Module size 8 genes
NF 0.58
%ile 83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.92TaAffx.14777.1.A1_atCA736788--1e+0At3g49580LSU1 (RESPONSE TO LOW SULFUR 1)O.I.H.G.S.X.
0.6786.30.93TaAffx.78296.1.S1_atCA734700--8e-1At5g45700NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.6383.10.93TaAffx.8084.2.S1_atCA742580--3e-2At5g02480-O.I.H.G.S.X.
0.6383.10.92Ta.6692.2.A1_atCA678021--1e-6At4g36960RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5779.20.93Ta.13274.2.A1_atCA613778--7e-2At5g05360unknown proteinO.I.H.G.S.X.
0.5072.40.93TaAffx.15154.2.S1_s_atCA744371--9e-1At3g62030peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)O.I.H.G.S.X.
0.4464.50.93TaAffx.84709.1.S1_atCA630743--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.3651.90.93TaAffx.23406.1.S1_atCA735527--9e-4At3g53610ATRAB8O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.199.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
9.199.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.999.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.998.7GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.198.1GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.196.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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