CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.132281.2.S1_x_at

Gene name
Homology with Arabidopsis Similar to At1g70700: TIFY7 (HF=6e+0)

Module size 6 genes

NF 0.54

%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.86 TaAffx.132281.2.S1_x_at CK212051 - - 6e+0 At1g70700 TIFY7 O.I. H.G. S.X.
0.67 86.3 0.80 TaAffx.132281.2.S1_at CK212051 - - 6e+0 At1g70700 TIFY7 O.I. H.G. S.X.
0.56 78.6 0.80 Ta.5149.1.A1_at CK213896 - - 3e-1 At1g07690 unknown protein O.I. H.G. S.X.
0.50 72.4 0.81 Ta.7716.1.S1_at BJ322896 - - 4e-1 At1g12665 - O.I. H.G. S.X.
0.44 64.5 0.86 Ta.7716.2.S1_s_at BJ317348 - - 4e+0 At3g26511 unknown protein O.I. H.G. S.X.
0.27 35.6 0.84 TaAffx.63970.1.A1_at CK163758 - - 6e+0 At5g62500 ATEB1B (END BINDING PROTEIN 1B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.8 99.8 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
22.6 99.8 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
14.9 99.5 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.4 99.1 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
8.7 98.9 GSM314267 tissue type: seedling, leaf - rep2 GSE12508 Transcription patterns during wheat development
7.8 98.7 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
7.4 98.6 GSM314268 tissue type: seedling, leaf - rep3 GSE12508 Transcription patterns during wheat development
7.1 98.5 GSM138154 genotype H5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.5 98.3 GSM138169 genotype B68 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.1 97.5 GSM138200 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the grape gene, 1614916_at, orthologous to the query gene, TaAffx.132281.2.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 68.8 1614916_at At1g70700 aquaporin PIP2 - 2e-27 At3g54820 PIP2 O.I. H.G. S.X.
0.36 50.7 1610982_at At1g70700 aquaporin PIP2 - 6e-18 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) O.I. H.G. S.X.
0.27 34.0 1619833_at At1g70700 - - 1e+0 At5g50345 - O.I. H.G. S.X.
0.27 34.0 1608199_at At1g70700 hypothetical protein LOC100264703 - 9e-3 At1g66140 ZFP4 (ZINC FINGER PROTEIN 4) O.I. H.G. S.X.
0.10 10.3 1615169_at At1g70700 hypothetical protein LOC100258290 - 3e-1 At3g14280 unknown protein O.I. H.G. S.X.
0.10 10.3 1615669_at At1g70700 hypothetical protein LOC100250979 - 2e-2 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) O.I. H.G. S.X.
0.06 6.8 1610562_at At1g70700 hypothetical protein LOC100249618 - 4e-32 At2g39130 amino acid transporter family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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