Co-expression analysis

Gene ID	TaAffx.132281.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g70700: TIFY7 (HF=6e+0)
Module size	6 genes
NF	0.54
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.86	TaAffx.132281.2.S1_x_at	CK212051	-	-	6e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.80	TaAffx.132281.2.S1_at	CK212051	-	-	6e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.80	Ta.5149.1.A1_at	CK213896	-	-	3e-1	At1g07690	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.81	Ta.7716.1.S1_at	BJ322896	-	-	4e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.86	Ta.7716.2.S1_s_at	BJ317348	-	-	4e+0	At3g26511	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.84	TaAffx.63970.1.A1_at	CK163758	-	-	6e+0	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.8	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
22.6	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
14.9	99.5	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.4	99.1	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.5	98.3	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.1	97.5	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the barley gene, Contig4816_x_at, orthologous to the query gene, TaAffx.132281.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig4816_x_at	At1g70700	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig4816_at	At1g70700	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig4817_at	At1g70700	-	-	2e-56	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig4815_at	At1g70700	-	-	1e+0	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig22458_at	At1g70700	-	-	8e-6	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig7032_at	At1g70700	-	-	1e-7	At5g64570	XYL4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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