Co-expression analysis

Gene ID	TaAffx.132271.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g46780: VQ motif-containing protein (HF=2e-1)
Module size	21 genes
NF	0.41
%ile	65.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	0.92	TaAffx.132271.3.S1_at	CA630053	-	-	2e-1	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.95	Ta.13520.1.A1_at	BQ171983	-	-	6e+0	At5g36170	HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.95	Ta.491.1.S1_at	BG906478	-	-	3e+0	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.95	Ta.27905.1.S1_at	CD887924	-	-	1e-1	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.95	Ta.23199.1.S1_at	CA634433	-	-	2e-43	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	Ta.25691.2.A1_at	CA608914	-	-	7e-2	At2g31090	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	Ta.7804.1.S1_at	BE471271	-	-	5e+0	At4g31860	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	Ta.7469.1.A1_at	CA633397	-	-	4e+0	At5g39310	ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.7717.3.S1_x_at	CA657178	-	-	7e-8	At3g51820	G4	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	Ta.29350.2.S1_a_at	CK156188	-	-	5e+0	At4g26420	GAMT1	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	Ta.4248.1.A1_at	BJ262816	-	-	6e+0	At5g12200	dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	Ta.5242.2.S1_at	BJ279121	-	-	7e-2	At5g14100	ATNAP14	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	Ta.25903.1.A1_at	CD454234	-	-	2e-6	At2g22870	EMB2001 (embryo defective 2001)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	Ta.29265.1.S1_at	CK158853	-	-	3e-6	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	Ta.29549.1.S1_at	CA714079	-	-	6e-1	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.23199.1.S1_s_at	CA634433	-	-	2e-43	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	Ta.20337.1.A1_at	CA678434	-	-	4e+0	At2g10450	14-3-3 protein, putative / grf15, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.17162.1.S1_x_at	BQ744202	-	-	5e+0	At1g63970	ISPF	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.7717.1.S1_x_at	BJ306896	-	-	3e-25	At3g51820	G4	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.20969.2.A1_a_at	BJ264486	-	-	3e-1	At3g57950	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.7717.1.S1_a_at	BJ306896	-	-	3e-25	At3g51820	G4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6	95.6	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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