Co-expression analysis

Gene ID TaAffx.130819.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g02290: zinc finger (C3HC4-type RING finger) family protein (HF=4e-14)
Module size 8 genes
NF 0.23
%ile 38.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6383.10.96TaAffx.130819.2.A1_atBJ282311--4e-14At3g02290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4058.40.96Ta.8462.2.A1_atCA649919--4e+0At5g25960unknown proteinO.I.H.G.S.X.
0.3346.90.97Ta.24303.1.A1_atCD454649--5e-1At1g29110cysteine proteinase, putativeO.I.H.G.S.X.
0.2939.20.97TaAffx.130819.1.A1_atBG607589--4e-9At3g02290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1719.80.97Ta.7210.1.S1_a_atCK212620--5e-2At3g61350SKIP4 (SKP1 INTERACTING PARTNER 4)O.I.H.G.S.X.
0.1618.20.96Ta.18528.2.S1_a_atCA596497--4e-37At2g32980unknown proteinO.I.H.G.S.X.
0.1618.20.96TaAffx.2433.1.S1_atCA601863--4e+0At1g04190tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.1415.80.96Ta.11271.1.A1_atBQ169744--5e-1At5g10400histone H3O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.1GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.498.9GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.298.8GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.698.3GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.697.8GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.097.4GSM343686Wheat var. Kennedy_Fp inoculated_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.697.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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