Co-expression analysis

Gene ID	TaAffx.129824.3.A1_at
Gene name
Homology with Arabidopsis	Similar to Atcg00740: - (HF=1e-48)
Module size	6 genes
NF	0.79
%ile	96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.92	TaAffx.129824.3.A1_at	CA626300	-	-	1e-48	Atcg00740	-	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.92	TaAffx.4142.2.S1_at	CA672269	-	-	2e-20	Atcg00050	-	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.90	TaAffx.6988.1.S1_at	CA670860	-	-	2e-36	Atcg01110	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.89	Ta.24810.1.S1_at	BJ247487	-	-	5e-1	At1g68070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.90	TaAffx.6593.1.A1_at	CA685059	-	-	2e-6	Atcg00640	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.92	TaAffx.107547.1.S1_at	CA698108	-	-	4e-34	Atcg00180	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
112.7	100.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
19.7	99.7	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
8.2	98.8	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
6.6	98.3	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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