Co-expression analysis

Gene ID TaAffx.129513.2.A1_x_at
Gene name
Homology with ArabidopsisSimilar to At1g07890: APX1 (ascorbate peroxidase 1) (HF=5e-18)
Module size 20 genes
NF 0.45
%ile 70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.10.97TaAffx.129513.2.A1_x_atBJ306606--5e-18At1g07890APX1 (ascorbate peroxidase 1)O.I.H.G.S.X.
0.6786.30.98Ta.2848.1.S1_atBQ605815--1e-7At5g64350FKBP12 (FK506-BINDING PROTEIN)O.I.H.G.S.X.
0.6182.00.99Ta.23051.1.A1_a_atCK154103--4e-19At3g47930ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)O.I.H.G.S.X.
0.5576.80.98Ta.27454.2.S1_atBJ241826Cyclophilin-3e-14At2g29960CYP5 (CYCLOPHILIN 5)O.I.H.G.S.X.
0.5576.80.98Ta.14227.1.S1_atCD869993--1e-7At5g35680eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putativeO.I.H.G.S.X.
0.5374.90.98Ta.24987.1.S1_atCK166034Cytosolic malate dehydrogenase-1e-64At5g43330malate dehydrogenase, cytosolic, putativeO.I.H.G.S.X.
0.5072.40.98Ta.50.1.S1_atBJ307738TaWIN1 protein-1e-24At3g02520GRF7 (GENERAL REGULATORY FACTOR 7)O.I.H.G.S.X.
0.4969.70.98Ta.120.1.S1_a_atCN011089--6e-16At5g64400-O.I.H.G.S.X.
0.4767.90.98Ta.1902.2.S1_a_atCK209206--3e-4At5g36230eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinO.I.H.G.S.X.
0.4464.50.98Ta.1532.1.S1_a_atBJ231467eukaryotic translation initiation factor 5A3-2e-6At1g26630FBR12 (FUMONISIN B1-RESISTANT12)O.I.H.G.S.X.
0.4464.50.98Ta.659.3.S1_x_atCD878859Translation elongation factor 1 alpha-subunit-0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.4362.20.98Ta.2668.1.S1_atBJ280117--1e-22At4g26840SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)O.I.H.G.S.X.
0.4260.90.98Ta.23454.1.S1_atBJ215106--5e-1At1g27310NTF2A (NUCLEAR TRANSPORT FACTOR 2A)O.I.H.G.S.X.
0.4058.40.98Ta.2848.1.S1_x_atBQ605815--1e-7At5g64350FKBP12 (FK506-BINDING PROTEIN)O.I.H.G.S.X.
0.4058.40.98Ta.28664.1.S1_s_atBQ579127--2e+0At5g50770AtHSD6 (hydroxysteroid dehydrogenase 6)O.I.H.G.S.X.
0.3854.70.98Ta.27117.6.S1_x_atBJ262049--1e-12At3g0852060S ribosomal protein L41 (RPL41D)O.I.H.G.S.X.
0.3854.70.98Ta.120.2.S1_atBJ283857--3e-24At5g64400-O.I.H.G.S.X.
0.3854.70.98TaAffx.108368.1.S1_x_atCA689117--2e-22At1g14320SAC52 (SUPPRESSOR OF ACAULIS 52)O.I.H.G.S.X.
0.2735.60.98Ta.659.1.S1_x_atBI751166Translation elongation factor 1 alpha-subunit-0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.2735.60.98Ta.27713.1.A1_x_atCD879558elongation factor-1 alpha-0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.6GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.898.4GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.398.2GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.697.8GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.897.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.596.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.896.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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