Co-expression analysis

Gene ID TaAffx.12950.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g24275: - (HF=4e-3)
Module size 20 genes
NF 0.37
%ile 60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8894.40.97TaAffx.12950.1.S1_atBJ228090--4e-3At4g24275-O.I.H.G.S.X.
0.5475.50.98Ta.5254.1.S1_atBJ219348--2e-15At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)O.I.H.G.S.X.
0.5072.40.97Ta.3695.1.S1_atCA741986--5e-1At3g51100unknown proteinO.I.H.G.S.X.
0.4767.90.98Ta.2299.1.S1_atCK157281--4e-11At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.4464.50.98TaAffx.16093.1.A1_atBQ168677--3e+0At5g12330LRP1 (LATERAL ROOT PRIMORDIUM 1)O.I.H.G.S.X.
0.4464.50.98Ta.22275.1.S1_atCA735269--2e+0At5g36140CYP716A2O.I.H.G.S.X.
0.4464.50.98Ta.2299.3.S1_a_atCA672009--4e+0At2g42220rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.4159.60.98Ta.3136.1.S1_atCF134067--2e-16At1g63660GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putativeO.I.H.G.S.X.
0.4058.40.98Ta.27898.1.S1_atCD886940--1e+0Atmg00030-O.I.H.G.S.X.
0.4058.40.98Ta.6713.1.S1_atCK204213--5e-5At3g20000TOM40O.I.H.G.S.X.
0.3854.70.97Ta.12837.1.A1_atCK169294--5e+0At5g11920AtcwINV6 (6-&1-fructan exohydrolase)O.I.H.G.S.X.
0.3854.70.97Ta.4262.1.S1_atBQ804169--2e-10At1g60850ATRPAC42O.I.H.G.S.X.
0.3651.90.98Ta.11320.2.S1_atCA611508--5e-12At5g27820ribosomal protein L18 family proteinO.I.H.G.S.X.
0.2939.20.98Ta.6624.1.S1_a_atCK208299--4e-4At2g29530mitochondrial import inner membrane translocase (TIM10)O.I.H.G.S.X.
0.2939.20.98Ta.6282.1.S1_a_atBJ249264--1e-4At5g53480importin beta-2, putativeO.I.H.G.S.X.
0.2939.20.98Ta.25043.1.S1_atBE488976--1e+0At5g41071unknown proteinO.I.H.G.S.X.
0.2839.20.98Ta.8558.1.S1_atBQ280941--6e-1At5g37140tRNA-splicing endonuclease positive effector-relatedO.I.H.G.S.X.
0.2839.20.97Ta.28393.1.S1_a_atBG607691--1e-37At3g20050ATTCP-1O.I.H.G.S.X.
0.2532.10.98Ta.12395.1.S1_atCK208181--2e-2At5g15610proteasome family proteinO.I.H.G.S.X.
0.1821.00.98Ta.3293.1.S1_atCD934911--6e-6At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.499.3GSM298089Leaf tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
2.994.0GSM111223genotype H5 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM298077Leaf tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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