Co-expression analysis

Gene ID TaAffx.129082.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g64460: - (HF=3e-6)
Module size 6 genes
NF 0.43
%ile 68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.94TaAffx.129082.1.S1_x_atCK154420--3e-6At5g64460-O.I.H.G.S.X.
0.6786.30.95Ta.25619.2.S1_a_atCA609960--1e+0At2g14160nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3854.70.94Ta.3909.1.A1_x_atBJ274929--8e-1At3g01400armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.
0.3346.90.94TaAffx.24368.1.S1_x_atCA720312--1e+1At5g55507hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3244.40.94Ta.8149.1.A1_x_atCK205375--7e-35At4g14240-O.I.H.G.S.X.
0.2329.00.93TaAffx.39330.1.A1_atBG909016--3e+0At3g28950avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.099.4GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
10.899.2GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
10.199.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.299.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
9.199.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.199.0GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
8.498.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.697.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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