Co-expression analysis

Gene ID TaAffx.129081.2.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At4g32714: SCRL25 (SCR-Like 25) (HF=2e-2)
Module size 6 genes
NF 0.48
%ile 74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.93TaAffx.129081.2.S1_s_atCA608630--2e-2At4g32714SCRL25 (SCR-Like 25)O.I.H.G.S.X.
0.8393.40.92Ta.29930.1.S1_atBJ273225--5e+0At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.
0.5779.20.92TaAffx.71016.1.A1_atBE424472--1e+0At3g22930calmodulin, putativeO.I.H.G.S.X.
0.4464.50.92Ta.424.1.S1_atCA644335--5e+0At4g02370unknown proteinO.I.H.G.S.X.
0.2839.20.92Ta.25475.1.S1_x_atBT009449.1--2e-7At4g31550WRKY11O.I.H.G.S.X.
0.2633.60.92Ta.16082.2.S1_atCK211295--2e+0At2g32100OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.7GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.793.3GSM143508Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.793.3GSM143509Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.592.5GSM143510Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.618.14.A1_at, orthologous to the query gene, TaAffx.129081.2.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.1PtpAffx.618.14.A1_atAt4g32714--5e-1At3g45555zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.8697.4Ptp.1553.1.S1_atAt4g32714--6e-1At3g12170DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.7694.3Ptp.1553.1.S1_a_atAt4g32714--6e-1At3g12170DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.7192.6PtpAffx.16098.1.S1_atAt4g32714hypothetical protein-2e-1At3g14225GLIP4O.I.H.G.S.X.
0.6991.5Ptp.3815.1.S1_atAt4g32714hypothetical protein-2e+0At3g36659invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.6991.5PtpAffx.142862.1.S1_atAt4g32714autoinhibited H+ ATPase /// autoinhibited H+ ATPase-3e-85At4g30190AHA2O.I.H.G.S.X.
0.6588.6Ptp.3975.1.S1_atAt4g32714--3e+0At5g05470EIF2 ALPHAO.I.H.G.S.X.
0.6388.1Ptp.2465.1.S1_atAt4g32714cinnamoyl CoA reductase-like protein-1e-2At5g19440cinnamyl-alcohol dehydrogenase, putative (CAD)O.I.H.G.S.X.
0.5984.9PtpAffx.249.4.A1_x_atAt4g32714--9e-13At2g47520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.5683.9Ptp.1239.1.S1_atAt4g32714hypothetical protein-1e-16At4g20110vacuolar sorting receptor, putativeO.I.H.G.S.X.
0.4774.6PtpAffx.41739.1.S1_atAt4g32714--5e+0At1g30970SUF4 (suppressor of FRIGIDA4)O.I.H.G.S.X.
0.4673.7PtpAffx.193.1.S1_atAt4g32714hypothetical protein-4e-3At4g20290unknown proteinO.I.H.G.S.X.
0.4673.7Ptp.5347.1.S1_x_atAt4g32714hypothetical protein-1e-7At1g02920GSTF7O.I.H.G.S.X.
0.4471.9PtpAffx.20731.1.A1_atAt4g32714--5e-7At2g29490ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)O.I.H.G.S.X.
0.4369.7Ptp.5226.1.S1_atAt4g32714hypothetical protein-1e-13At1g49480RTV1 (related to vernalization1 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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