CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.129081.2.S1_s_at

Gene name
Homology with Arabidopsis Similar to At4g32714: SCRL25 (SCR-Like 25) (HF=2e-2)

Module size 6 genes

NF 0.48

%ile 74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.93 TaAffx.129081.2.S1_s_at CA608630 - - 2e-2 At4g32714 SCRL25 (SCR-Like 25) O.I. H.G. S.X.
0.83 93.4 0.92 Ta.29930.1.S1_at BJ273225 - - 5e+0 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein O.I. H.G. S.X.
0.57 79.2 0.92 TaAffx.71016.1.A1_at BE424472 - - 1e+0 At3g22930 calmodulin, putative O.I. H.G. S.X.
0.44 64.5 0.92 Ta.424.1.S1_at CA644335 - - 5e+0 At4g02370 unknown protein O.I. H.G. S.X.
0.28 39.2 0.92 Ta.25475.1.S1_x_at BT009449.1 - - 2e-7 At4g31550 WRKY11 O.I. H.G. S.X.
0.26 33.6 0.92 Ta.16082.2.S1_at CK211295 - - 2e+0 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0 97.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0 96.3 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9 96.1 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM143523 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7 93.3 GSM143508 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7 93.3 GSM143509 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5 92.5 GSM143510 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the rice gene, Os02g0437200, orthologous to the query gene, TaAffx.129081.2.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os02g0437200 At4g32714 - SNAP-34 1e+0 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) O.I. H.G. S.X.
0.93 99.2 Os02g0126400 At4g32714 - Protein kinase CPK1 6e-30 At2g17890 CPK16 O.I. H.G. S.X.
0.88 96.8 Os10g0580900 At4g32714 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein O.I. H.G. S.X.
0.64 83.4 Os02g0205500 At4g32714 - Naringenin-chalcone synthase family protein 7e-5 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) O.I. H.G. S.X.
0.50 68.0 Os03g0285800 At4g32714 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.
0.50 68.0 Os03g0241300 At4g32714 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) O.I. H.G. S.X.
0.46 60.9 Os03g0402800 At4g32714 - ZIM domain containing protein 2e+0 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) O.I. H.G. S.X.
0.44 58.1 Os01g0908700 At4g32714 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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