Co-expression analysis

Gene ID	TaAffx.129081.2.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At4g32714: SCRL25 (SCR-Like 25) (HF=2e-2)
Module size	6 genes
NF	0.48
%ile	74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.93	TaAffx.129081.2.S1_s_at	CA608630	-	-	2e-2	At4g32714	SCRL25 (SCR-Like 25)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.92	Ta.29930.1.S1_at	BJ273225	-	-	5e+0	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.92	TaAffx.71016.1.A1_at	BE424472	-	-	1e+0	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.92	Ta.424.1.S1_at	CA644335	-	-	5e+0	At4g02370	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.92	Ta.25475.1.S1_x_at	BT009449.1	-	-	2e-7	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.92	Ta.16082.2.S1_at	CK211295	-	-	2e+0	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM143510	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the soybean gene, Gma.13098.1.A1_s_at, orthologous to the query gene, TaAffx.129081.2.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.3	Gma.13098.1.A1_s_at	At4g32714	-	-	3e+0	At5g27880	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.18087.1.S1_at	At4g32714	-	-	7e-46	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.14064.1.A1_s_at	At4g32714	-	-	3e+0	At3g26561	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.15172.1.S1_at	At4g32714	-	-	1e+0	At2g40935	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.42933.1.S1_at	At4g32714	-	-	3e+0	At4g22000	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.13205.1.S1_at	At4g32714	-	-	2e-2	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.10674.1.S1_at	At4g32714	-	-	4e-17	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.51048.1.S1_at	At4g32714	-	-	6e-5	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.10429.1.S1_at	At4g32714	-	-	3e-9	At5g01270	CPL2	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.16887.2.S1_at	At4g32714	-	-	2e-37	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.7218.1.S1_at	At4g32714	-	-	6e-23	At1g67325	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.4482.1.S1_at	At4g32714	-	-	8e-2	At2g28910	CXIP4 (CAX INTERACTING PROTEIN 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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