Co-expression analysis

Gene ID TaAffx.128896.20.S1_at
Gene name
Homology with ArabidopsisSimilar to Atcg00790: - (HF=6e-36)
Module size 24 genes
NF 0.23
%ile 39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.74TaAffx.128896.20.S1_atCA683652--6e-36Atcg00790-O.I.H.G.S.X.
0.4666.80.87TaAffx.112971.1.S1_atCA618509--3e-1At5g54400methyltransferaseO.I.H.G.S.X.
0.3956.10.90TaAffx.29234.1.S1_x_atCA647550--7e-1At5g11920AtcwINV6 (6-&1-fructan exohydrolase)O.I.H.G.S.X.
0.3448.10.80TaAffx.54631.1.S1_atCA679018--2e-2At1g05300ZIP5O.I.H.G.S.X.
0.3448.10.91TaAffx.129222.6.S1_atBJ275924--8e-1At5g14750ATMYB66 (MYB DOMAIN PROTEIN 66)O.I.H.G.S.X.
0.3142.70.92TaAffx.7150.1.S1_atCA667568--4e+0At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.3040.90.91TaAffx.30005.1.S1_atCA630801--1e+0At4g00840zinc ion bindingO.I.H.G.S.X.
0.2735.60.93TaAffx.51913.1.S1_x_atCA716536--8e-1At5g56110ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)O.I.H.G.S.X.
0.2633.60.87TaAffx.59629.1.S1_atCA597893--8e-1At1g22980unknown proteinO.I.H.G.S.X.
0.2633.60.90TaAffx.84515.1.S1_atCA635080--4e+0At4g24230ACBP3 (ACYL-COA-BINDING DOMAIN 3)O.I.H.G.S.X.
0.2532.10.93TaAffx.105660.1.S1_atCA731441--1e-3At3g01015-O.I.H.G.S.X.
0.2024.00.92Ta.17502.1.S1_atCA621329--3e-1At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.2024.00.89TaAffx.107843.1.S1_atCA694547--4e+0At2g38480integral membrane protein, putativeO.I.H.G.S.X.
0.1922.40.91Ta.14757.1.S1_atCA681525--4e+0At2g29400TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)O.I.H.G.S.X.
0.1821.00.93TaAffx.113024.3.S1_atCA618057--3e-1At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.1719.80.93TaAffx.83263.1.S1_atCA659582--1e+0At1g61566RALFL9 (ralf-like 9)O.I.H.G.S.X.
0.1517.10.90TaAffx.22693.1.S1_atCA746804--2e+0At5g17750AAA-type ATPase family proteinO.I.H.G.S.X.
0.1517.10.91TaAffx.112465.2.S1_atCA623711--3e-13At4g00360CYP86A2 (CYTOCHROME P450 86 A2)O.I.H.G.S.X.
0.1415.80.91TaAffx.38529.1.A1_atBJ220916--7e-1At4g26840SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)O.I.H.G.S.X.
0.1314.60.92TaAffx.6560.1.S1_atCA683082--4e+0At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.1213.30.93TaAffx.50141.2.S1_atCA745109--1e+0At3g24280SMAP2 (small acidic protein 2)O.I.H.G.S.X.
0.1213.30.93TaAffx.105981.1.S1_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.0910.40.92TaAffx.119995.1.S1_atBJ248672--1e+0At1g31335unknown proteinO.I.H.G.S.X.
0.089.40.90TaAffx.15085.2.A1_x_atBJ242329--1e+0At5g21960AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.899.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
11.899.3GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.898.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.698.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.498.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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