Co-expression analysis

Gene ID	TaAffx.128848.3.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g08600: unknown protein (HF=4e+0)
Module size	7 genes
NF	0.29
%ile	47.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.87	TaAffx.128848.3.S1_s_at	CA649248	-	-	4e+0	At3g08600	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.90	TaAffx.128848.3.S1_at	CA649248	-	-	4e+0	At3g08600	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	Ta.18282.1.S1_x_at	CA615952	-	-	5e+0	At5g28040	transcription regulator	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.92	TaAffx.83758.1.S1_s_at	CA651869	-	-	2e-8	At1g14000	VIK (VH1-INTERACTING KINASE)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.90	Ta.18768.2.S1_at	CA636388	-	-	3e+0	At5g05930	guanylyl cyclase-related (GC1)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.90	TaAffx.92837.1.S1_at	BJ245557	-	-	3e-10	At3g05820	beta-fructofuranosidase/ catalytic	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.92	Ta.7354.1.S1_at	CK215574	-	-	6e-1	At3g19200	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.7	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.7	98.4	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.5	97.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.4	97.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM139919	Anther diplotene-anaphaseI rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0	96.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig875_s_at, orthologous to the query gene, TaAffx.128848.3.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	Contig875_s_at	At3g08600	-	-	2e-3	At3g05150	sugar transporter family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	HVSMEk0023O04r2_at	At3g08600	-	-	8e-2	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig9679_at	At3g08600	-	-	2e-1	At5g48370	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig17499_at	At3g08600	-	-	5e-1	At2g10930	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	HI14F16r_s_at	At3g08600	-	-	8e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig11835_at	At3g08600	-	-	5e-2	At1g62400	HT1 (high leaf temperature 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig17635_at	At3g08600	-	-	5e+0	At5g44080	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig13264_at	At3g08600	-	-	2e+0	At3g55860	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig18590_at	At3g08600	-	-	2e-1	At1g80530	nodulin family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	HA03F09r_s_at	At3g08600	-	-	3e-1	At4g14713	PPD1 (PEAPOD 1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig13967_at	At3g08600	-	-	8e-6	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig18534_at	At3g08600	-	-	8e-1	At2g33775	RALFL19 (ralf-like 19)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig3995_s_at	At3g08600	-	-	7e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig8532_at	At3g08600	-	-	1e-5	At5g16120	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	rbaal0c08_s_at	At3g08600	-	-	5e+0	At4g02235	AGL51	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig19949_at	At3g08600	-	-	7e+0	At3g02620	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig8077_at	At3g08600	-	-	7e-9	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig22601_at	At3g08600	-	-	2e+0	At3g62610	ATMYB11 (MYB DOMAIN PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig12106_at	At3g08600	-	-	3e-6	At4g21460	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig13646_at	At3g08600	-	-	1e+0	At1g26660	c-myc binding protein, putative / prefoldin, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig16867_at	At3g08600	-	-	7e-9	At3g02690	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig1498_s_at	At3g08600	-	-	7e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig5224_at	At3g08600	-	-	7e-9	At1g32130	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig1512_at	At3g08600	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig4660_s_at	At3g08600	-	-	2e-14	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig2580_3_s_at	At3g08600	-	-				O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig8146_at	At3g08600	-	-	6e-30	At1g79830	GC5 (golgin candidate 5)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig6283_at	At3g08600	-	-	1e-1	At3g60410	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig25066_at	At3g08600	-	-	5e+0	At5g10730	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig13002_at	At3g08600	-	-	2e-10	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig6631_at	At3g08600	-	-	5e-1	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig4923_at	At3g08600	-	-	9e-5	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig4106_at	At3g08600	-	-	4e+0	At2g42760	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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