Co-expression analysis

Gene ID TaAffx.128848.3.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At3g08600: unknown protein (HF=4e+0)
Module size 7 genes
NF 0.29
%ile 47.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6182.00.87TaAffx.128848.3.S1_s_atCA649248--4e+0At3g08600unknown proteinO.I.H.G.S.X.
0.5576.80.90TaAffx.128848.3.S1_atCA649248--4e+0At3g08600unknown proteinO.I.H.G.S.X.
0.3651.90.92Ta.18282.1.S1_x_atCA615952--5e+0At5g28040transcription regulatorO.I.H.G.S.X.
0.3346.90.92TaAffx.83758.1.S1_s_atCA651869--2e-8At1g14000VIK (VH1-INTERACTING KINASE)O.I.H.G.S.X.
0.2024.00.90Ta.18768.2.S1_atCA636388--3e+0At5g05930guanylyl cyclase-related (GC1)O.I.H.G.S.X.
0.1618.20.90TaAffx.92837.1.S1_atBJ245557--3e-10At3g05820beta-fructofuranosidase/ catalyticO.I.H.G.S.X.
0.1415.80.92Ta.7354.1.S1_atCK215574--6e-1At3g19200unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.7GSM139920Anther diplotene-anaphaseI rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.798.4GSM139921Anther diplotene-anaphaseI rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.597.8GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.497.7GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM139917Anther leptotene-pachytene rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.396.7GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM139919Anther diplotene-anaphaseI rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.096.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig875_s_at, orthologous to the query gene, TaAffx.128848.3.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8795.0Contig875_s_atAt3g08600--2e-3At3g05150sugar transporter family proteinO.I.H.G.S.X.
0.4762.2HVSMEk0023O04r2_atAt3g08600--8e-2At4g36740ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)O.I.H.G.S.X.
0.4356.4Contig9679_atAt3g08600--2e-1At5g48370thioesterase family proteinO.I.H.G.S.X.
0.3747.9Contig17499_atAt3g08600--5e-1At2g10930unknown proteinO.I.H.G.S.X.
0.3747.9HI14F16r_s_atAt3g08600--8e+0At5g59360unknown proteinO.I.H.G.S.X.
0.3240.3Contig11835_atAt3g08600--5e-2At1g62400HT1 (high leaf temperature 1)O.I.H.G.S.X.
0.3240.3Contig17635_atAt3g08600--5e+0At5g44080bZIP transcription factor family proteinO.I.H.G.S.X.
0.3240.3Contig13264_atAt3g08600--2e+0At3g55860unknown proteinO.I.H.G.S.X.
0.3138.6Contig18590_atAt3g08600--2e-1At1g80530nodulin family proteinO.I.H.G.S.X.
0.3138.6HA03F09r_s_atAt3g08600--3e-1At4g14713PPD1 (PEAPOD 1)O.I.H.G.S.X.
0.3037.0Contig13967_atAt3g08600--8e-6At1g29800phosphoinositide binding / zinc ion bindingO.I.H.G.S.X.
0.2935.5Contig18534_atAt3g08600--8e-1At2g33775RALFL19 (ralf-like 19)O.I.H.G.S.X.
0.2935.5Contig3995_s_atAt3g08600--7e+0At5g42300UBL5 (UBIQUITIN-LIKE PROTEIN 5)O.I.H.G.S.X.
0.2935.5Contig8532_atAt3g08600--1e-5At5g16120hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2935.5rbaal0c08_s_atAt3g08600--5e+0At4g02235AGL51O.I.H.G.S.X.
0.2935.5Contig19949_atAt3g08600--7e+0At3g02620acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.2732.1Contig8077_atAt3g08600--7e-9At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.2630.4Contig22601_atAt3g08600--2e+0At3g62610ATMYB11 (MYB DOMAIN PROTEIN 11)O.I.H.G.S.X.
0.2528.9Contig12106_atAt3g08600--3e-6At4g21460unknown proteinO.I.H.G.S.X.
0.2427.2Contig13646_atAt3g08600--1e+0At1g26660c-myc binding protein, putative / prefoldin, putativeO.I.H.G.S.X.
0.2427.2Contig16867_atAt3g08600--7e-9At3g02690integral membrane family proteinO.I.H.G.S.X.
0.2326.1Contig1498_s_atAt3g08600--7e-12At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.2326.1Contig5224_atAt3g08600--7e-9At1g32130-O.I.H.G.S.X.
0.2326.1Contig1512_atAt3g08600--0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.
0.2224.2Contig4660_s_atAt3g08600--2e-14At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.
0.2224.2Contig2580_3_s_atAt3g08600--O.I.H.G.S.X.
0.2224.2Contig8146_atAt3g08600--6e-30At1g79830GC5 (golgin candidate 5)O.I.H.G.S.X.
0.2122.6Contig6283_atAt3g08600--1e-1At3g60410unknown proteinO.I.H.G.S.X.
0.2021.1Contig25066_atAt3g08600--5e+0At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.1919.6Contig13002_atAt3g08600--2e-10At1g45150unknown proteinO.I.H.G.S.X.
0.1919.6Contig6631_atAt3g08600--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.1716.9Contig4923_atAt3g08600--9e-5At2g02560CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)O.I.H.G.S.X.
0.1412.9Contig4106_atAt3g08600--4e+0At2g42760unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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