Co-expression analysis

Gene ID	TaAffx.128848.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g08600: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.23
%ile	38.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.89	TaAffx.128848.3.S1_at	CA649248	-	-	4e+0	At3g08600	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.87	TaAffx.128848.3.S1_s_at	CA649248	-	-	4e+0	At3g08600	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.86	TaAffx.128848.1.S1_at	CD871122	-	-	2e+0	At1g75220	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.90	Ta.18768.2.S1_at	CA636388	-	-	3e+0	At5g05930	guanylyl cyclase-related (GC1)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.91	Ta.5247.1.A1_at	CA709980	-	-	5e+0	At2g19045	RALFL13 (RALF-LIKE 13)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.90	Ta.7354.1.S1_at	CK215574	-	-	6e-1	At3g19200	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.0	98.8	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.2	98.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.4	97.7	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM139919	Anther diplotene-anaphaseI rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4	96.8	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

A co-expression module including the grape gene, 1620830_at, orthologous to the query gene, TaAffx.128848.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	1620830_at	At3g08600	hypothetical protein LOC100247627	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1614298_at	At3g08600	hypothetical protein LOC100256505	-	7e-40	At1g08465	YAB2 (YABBY2)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1620204_at	At3g08600	-	-	8e-1	At1g20070	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1612893_at	At3g08600	hypothetical protein LOC100243553	-	2e-18	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1609523_at	At3g08600	hypothetical protein LOC100250310	-	7e-2	At2g28020	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	1613390_at	At3g08600	hypothetical protein LOC100255619	-	5e-39	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1614257_at	At3g08600	hypothetical protein LOC100250970	-	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1610491_at	At3g08600	hypothetical protein LOC100247772	-	3e-20	At3g07670	SET domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1617079_at	At3g08600	-	-	4e-1	At3g26900	shikimate kinase family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1610508_at	At3g08600	hypothetical protein LOC100253402	-	1e-9	At3g44620	protein tyrosine phosphatase	O.I.	H.G.	S.X.	Please select
0.30	39.4	1617962_at	At3g08600	hypothetical protein LOC100250100	-	1e-10	At1g60010	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1607285_s_at	At3g08600	hypothetical protein LOC100262997	-	3e-54	At5g52520	OVA6 (OVULE ABORTION 6)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1618995_at	At3g08600	hypothetical protein LOC100261804	-	2e-6	At4g25370	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1618219_at	At3g08600	hypothetical protein LOC100267536	-	3e-10	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1616672_at	At3g08600	hypothetical protein LOC100252527	-	2e-2	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1607003_at	At3g08600	-	-	4e+0	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	O.I.	H.G.	S.X.	Please select
0.22	25.6	1610345_at	At3g08600	hypothetical protein LOC100266550	-	1e-1	At3g30845	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1615571_at	At3g08600	hypothetical protein LOC100250417	-	1e-24	At5g24300	SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1607640_at	At3g08600	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1607526_at	At3g08600	hypothetical protein LOC100254959	-	3e-1	At5g26200	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1620439_at	At3g08600	hypothetical protein LOC100242621	-	1e+0	At5g08320	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1620553_at	At3g08600	hypothetical protein LOC100265994	-	4e-28	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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