Co-expression analysis

Gene ID TaAffx.128848.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g11475: NRPB10 (HF=4e+0)
Module size 6 genes
NF 0.25
%ile 41.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.90.94TaAffx.128848.2.S1_atBJ295634--4e+0At1g11475NRPB10O.I.H.G.S.X.
0.5072.40.94Ta.13987.3.S1_x_atCA603461--8e-1At3g06090unknown proteinO.I.H.G.S.X.
0.4362.20.94Ta.13987.1.S1_atCA620703--6e-25At5g65010ASN2 (ASPARAGINE SYNTHETASE 2)O.I.H.G.S.X.
0.1922.40.94Ta.3803.1.A1_atBJ254018--3e-1At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.1618.20.94Ta.4559.1.A1_atCD936361--3e-2At2g20190CLASP (CLIP-ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.0910.40.94Ta.6601.1.S1_atBJ216989--1e-4At5g19750peroxisomal membrane 22 kDa family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.797.1GSM324486Si- B- rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.595.4GSM324495Si+ B+ rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.395.0GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.395.0GSM324494Si+ B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.294.8GSM324493Si+ B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.294.8GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM324485Si- B- rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.094.3GSM139932Anther mature anthers rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.094.3GSM138205genotype H8 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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