Co-expression analysis

Gene ID TaAffx.128617.18.S1_x_at
Gene name
Homology with ArabidopsisSimilar to Atcg01120: - (HF=4e-20)
Module size 6 genes
NF 0.85
%ile 98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.90TaAffx.128617.18.S1_x_atCA738259--4e-20Atcg01120-O.I.H.G.S.X.
0.8393.40.91TaAffx.134856.1.S1_x_atCA693789--9e-9Atcg00040-O.I.H.G.S.X.
0.8092.20.90TaAffx.419.1.S1_atCA677519--1e-30Atcg00380-O.I.H.G.S.X.
0.7790.80.90TaAffx.53260.1.S1_atCA694515--3e-13Atcg00740-O.I.H.G.S.X.
0.6786.30.90TaAffx.56498.1.S1_atCA650276--3e+0At3g45050unknown proteinO.I.H.G.S.X.
0.6786.30.93TaAffx.128617.5.S1_atCA671511--2e-45Atcg01120-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.899.2GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
8.598.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.697.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.597.8GSM143526Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.497.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM143525Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.296.6GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.196.4GSM143512Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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