Co-expression analysis

Gene ID TaAffx.12568.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g45230: defective chloroplasts and leaves protein-related / DCL protein-related (HF=3e+0)
Module size 6 genes
NF 0.21
%ile 35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.76TaAffx.12568.3.S1_atCA649670--3e+0At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedO.I.H.G.S.X.
0.3651.90.93TaAffx.55497.1.S1_atCA665286--3e-1At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2329.00.93TaAffx.110614.4.S1_atCA605907--3e-1At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.2227.10.93TaAffx.112556.1.S1_atCA622998--4e+0At1g67760ATP binding / protein binding / unfolded protein bindingO.I.H.G.S.X.
0.2125.50.94TaAffx.105981.1.S1_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.078.60.93Ta.2138.2.S1_atCA632124--1e+0At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.326.1.A1_at, orthologous to the query gene, TaAffx.12568.3.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7691.1ZmAffx.326.1.A1_atAt1g45230--8e-1At2g26860F-box family proteinO.I.H.G.S.X.
0.6077.8ZmAffx.410.1.S1_atAt1g45230--2e-1At5g61630unknown proteinO.I.H.G.S.X.
0.5674.4ZmAffx.370.1.A1_atAt1g45230--3e+0At2g42610LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)O.I.H.G.S.X.
0.4658.4ZmAffx.426.1.A1_atAt1g45230--5e-2At5g43210endo/excinuclease amino terminal domain-containing proteinO.I.H.G.S.X.
0.4455.7ZmAffx.271.1.S1_atAt1g45230--1e+1At5g09430hydrolaseO.I.H.G.S.X.
0.4149.7Zm.15330.1.A1_atAt1g45230hypothetical protein LOC100278759-4e+0At3g12955auxin-responsive protein-relatedO.I.H.G.S.X.
0.4149.7ZmAffx.434.1.A1_atAt1g45230gpm2 protein-2e-1At3g01790ribosomal protein L13 family proteinO.I.H.G.S.X.
0.3945.6ZmAffx.338.1.S1_atAt1g45230--3e+0At4g12460ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)O.I.H.G.S.X.
0.3641.3Zm.1223.1.A1_atAt1g45230--8e-20At2g34680AIR9O.I.H.G.S.X.
0.3641.3ZmAffx.353.1.S1_atAt1g45230--6e+0Atcg01080-O.I.H.G.S.X.
0.3336.0ZmAffx.664.1.S1_atAt1g45230--4e+0At1g08790unknown proteinO.I.H.G.S.X.
0.3029.8ZmAffx.331.1.S1_atAt1g45230--6e-1At4g26950unknown proteinO.I.H.G.S.X.
0.2828.1Zm.11654.1.A1_atAt1g45230hypothetical protein LOC100280135-1e-5At3g54420ATEP3O.I.H.G.S.X.
0.2828.1ZmAffx.675.1.A1_atAt1g45230--3e+0At4g24700unknown proteinO.I.H.G.S.X.
0.2622.7Zm.16259.3.A1_a_atAt1g45230hypothetical protein LOC100273269-2e+0At3g20865AGP40 (arabinogalactan-protein 40)O.I.H.G.S.X.
0.2115.5Zm.622.1.S1_atAt1g45230tonoplast membrane integral protein ZmTIP3-2-4e-2At2g01340unknown proteinO.I.H.G.S.X.
0.2014.2Zm.2637.1.A1_atAt1g45230oleosin Bn-V-1e-2At2g06520PSBX (photosystem II subunit X)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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