Co-expression analysis

Gene ID	TaAffx.12568.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g45230: defective chloroplasts and leaves protein-related / DCL protein-related (HF=3e+0)
Module size	6 genes
NF	0.21
%ile	35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.76	TaAffx.12568.3.S1_at	CA649670	-	-	3e+0	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.93	TaAffx.55497.1.S1_at	CA665286	-	-	3e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	TaAffx.110614.4.S1_at	CA605907	-	-	3e-1	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.112556.1.S1_at	CA622998	-	-	4e+0	At1g67760	ATP binding / protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	Ta.2138.2.S1_at	CA632124	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.210316.1.S1_x_at, orthologous to the query gene, TaAffx.12568.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	PtpAffx.210316.1.S1_x_at	At1g45230	NAC domain protein, IPR003441	-	2e-1	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.212297.1.S1_at	At1g45230	-	-	5e-3	At2g40620	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.219280.1.S1_x_at	At1g45230	hypothetical protein	-	5e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.201956.1.S1_at	At1g45230	hypothetical protein	-	1e-68	At4g24580	REN1 (ROP1 ENHANCER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.86422.1.A1_at	At1g45230	-	-	6e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.79508.1.S1_at	At1g45230	hypothetical protein	-	4e-89	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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