CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.12568.3.S1_at

Gene name
Homology with Arabidopsis Similar to At1g45230: defective chloroplasts and leaves protein-related / DCL protein-related (HF=3e+0)

Module size 6 genes

NF 0.21

%ile 35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.76 TaAffx.12568.3.S1_at CA649670 - - 3e+0 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related O.I. H.G. S.X.
0.36 51.9 0.93 TaAffx.55497.1.S1_at CA665286 - - 3e-1 At5g62610 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.23 29.0 0.93 TaAffx.110614.4.S1_at CA605907 - - 3e-1 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.22 27.1 0.93 TaAffx.112556.1.S1_at CA622998 - - 4e+0 At1g67760 ATP binding / protein binding / unfolded protein binding O.I. H.G. S.X.
0.21 25.5 0.94 TaAffx.105981.1.S1_at CA727065 - - 3e-1 At4g11870 unknown protein O.I. H.G. S.X.
0.07 8.6 0.93 Ta.2138.2.S1_at CA632124 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
4.9 97.3 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
4.6 97.0 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os03g0191400, orthologous to the query gene, TaAffx.12568.3.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 95.0 Os03g0191400 At1g45230 - Ras GTPase family protein 3e-21 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) O.I. H.G. S.X.
0.50 68.0 Os04g0503600 At1g45230 - Protein kinase domain containing protein 2e+0 At5g58940 CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) O.I. H.G. S.X.
0.46 60.9 Os11g0703400 At1g45230 - Snf7 family protein 2e-19 At2g06530 VPS2.1 O.I. H.G. S.X.
0.44 58.1 Os04g0451900 At1g45230 - Protein phosphatase 2C-like domain containingprotein 6e-11 At1g22280 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.39 48.3 Os02g0690200 At1g45230 - Conserved hypothetical protein 4e-1 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.35 41.7 Os02g0475300 At1g45230 - Membrane attack complexcomponent/perforin/complement C9 family protein 5e+0 At5g08590 SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1) O.I. H.G. S.X.
0.33 38.8 Os02g0166600 At1g45230 - Conserved hypothetical protein 5e-2 At5g39540 - O.I. H.G. S.X.
0.33 38.8 Os02g0173800 At1g45230 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein O.I. H.G. S.X.
0.27 27.5 Os04g0452000 At1g45230 - Protein phosphatase type 2C 2e-10 At1g22280 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.23 21.2 Os02g0606800 At1g45230 - Isochorismatase hydrolase family protein 5e-1 At1g69080 universal stress protein (USP) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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