CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.12568.3.S1_at

Gene name
Homology with Arabidopsis Similar to At1g45230: defective chloroplasts and leaves protein-related / DCL protein-related (HF=3e+0)

Module size 6 genes

NF 0.21

%ile 35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.76 TaAffx.12568.3.S1_at CA649670 - - 3e+0 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related O.I. H.G. S.X.
0.36 51.9 0.93 TaAffx.55497.1.S1_at CA665286 - - 3e-1 At5g62610 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.23 29.0 0.93 TaAffx.110614.4.S1_at CA605907 - - 3e-1 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.22 27.1 0.93 TaAffx.112556.1.S1_at CA622998 - - 4e+0 At1g67760 ATP binding / protein binding / unfolded protein binding O.I. H.G. S.X.
0.21 25.5 0.94 TaAffx.105981.1.S1_at CA727065 - - 3e-1 At4g11870 unknown protein O.I. H.G. S.X.
0.07 8.6 0.93 Ta.2138.2.S1_at CA632124 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
4.9 97.3 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
4.6 97.0 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the barley gene, Contig8552_at, orthologous to the query gene, TaAffx.12568.3.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 Contig8552_at At1g45230 - - 2e+0 At4g15830 binding O.I. H.G. S.X.
0.63 80.3 Contig5447_at At1g45230 - - 4e-62 At5g10840 endomembrane protein 70, putative O.I. H.G. S.X.
0.50 66.9 Contig22314_at At1g45230 - - 5e+0 At3g26770 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.50 66.9 Contig12674_at At1g45230 - - 4e-1 At5g57850 aminotransferase class IV family protein O.I. H.G. S.X.
0.36 47.1 Contig5744_at At1g45230 - - 1e-7 At2g40600 appr-1-p processing enzyme family protein O.I. H.G. S.X.
0.36 47.1 Contig1751_x_at At1g45230 - - 1e-1 At1g15270 - O.I. H.G. S.X.
0.24 27.2 Contig7136_at At1g45230 - - 3e-7 At3g22420 WNK2 (WITH NO K 2) O.I. H.G. S.X.
0.10 8.4 Contig5533_at At1g45230 - - 2e-7 At4g33070 pyruvate decarboxylase, putative O.I. H.G. S.X.
0.07 5.8 Contig2916_at At1g45230 UDP-D-glucuronate decarboxylase - 1e-33 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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