Co-expression analysis

Gene ID TaAffx.12568.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g45230: defective chloroplasts and leaves protein-related / DCL protein-related (HF=3e+0)
Module size 6 genes
NF 0.21
%ile 35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.76TaAffx.12568.3.S1_atCA649670--3e+0At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedO.I.H.G.S.X.
0.3651.90.93TaAffx.55497.1.S1_atCA665286--3e-1At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2329.00.93TaAffx.110614.4.S1_atCA605907--3e-1At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.2227.10.93TaAffx.112556.1.S1_atCA622998--4e+0At1g67760ATP binding / protein binding / unfolded protein bindingO.I.H.G.S.X.
0.2125.50.94TaAffx.105981.1.S1_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.078.60.93Ta.2138.2.S1_atCA632124--1e+0At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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